PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

C2H2

Protein Properties

Length: 537aa MW: 55785.5 Da PI: 8.2628

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.007G028800.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.1	1.5e-05	68	90	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Potri.007G028800.1 68 FVCEICNKGFQRDQNLQLHRRGH 90 89*******************88 PP
2	zf-C2H2	11.1	0.0012	144	166	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H + + Potri.007G028800.1 144 WKCDKCSKKYAVQSDWKAHSKIC 166 58*****************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	1.8E-5	67	90	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	6.91E-7	67	90	No hit	No description
PROSITE profile	PS50157	10.949	68	90	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.017	68	90	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	70	90	IPR007087	Zinc finger, C2H2
SMART	SM00355	190	109	139	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	6.9E-4	132	165	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	6.91E-7	139	164	No hit	No description
SMART	SM00355	150	144	164	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 537 aa Download sequence Send to blast
MPVDLDNSST ASGEASVSSS GNQPPPPQQP PSKSAATAKK KRNLPGMPDP EAEVIALSPK 60 TLLATNRFVC EICNKGFQRD QNLQLHRRGH NLPWKLRQRS SKDVKKRVYV CPEPTCVHHD 120 PSRALGDLTG IKKHFCRKHG EKKWKCDKCS KKYAVQSDWK AHSKICGTRE YKCDCGTLFS 180 RRDSFITHRA FCDALAEESA RAQTQTPNPN PKPNQESDPK VQVDSSPPPA PVAPPVAPDF 240 GSDQGQAPPG LAQSTGMISS PVLAIQSPEL SDDPSQIIEE APAPAPAPAP APAPATVTAG 300 FNGSFSSSTS SSSNGSSTSS VFASLFASST ASGSLQAPQT TAFTDLIHAM AHPDRPTDLT 360 PSSTEPISLC LSTNHGSSIF GTAGQERRQY APPPQPAMSA TALLQKAAQM GAAATNASLL 420 RGLGIVSSSS SSAQPDNMQW GHRQMEPENA SVTAGLGLGL PCDGGSGLKE LMMGTPSVFG 480 PKHATLDFLG LGMAAGGSPS GGLSALITSI GGGLDVAAAA ASFGGGEFSG KDMRRS*

Sequence ? help Back to Top

Protein Sequence Length: 537 aa Download sequence Send to blast

MPVDLDNSST ASGEASVSSS GNQPPPPQQP PSKSAATAKK KRNLPGMPDP EAEVIALSPK  60
TLLATNRFVC EICNKGFQRD QNLQLHRRGH NLPWKLRQRS SKDVKKRVYV CPEPTCVHHD  120
PSRALGDLTG IKKHFCRKHG EKKWKCDKCS KKYAVQSDWK AHSKICGTRE YKCDCGTLFS  180
RRDSFITHRA FCDALAEESA RAQTQTPNPN PKPNQESDPK VQVDSSPPPA PVAPPVAPDF  240
GSDQGQAPPG LAQSTGMISS PVLAIQSPEL SDDPSQIIEE APAPAPAPAP APAPATVTAG  300
FNGSFSSSTS SSSNGSSTSS VFASLFASST ASGSLQAPQT TAFTDLIHAM AHPDRPTDLT  360
PSSTEPISLC LSTNHGSSIF GTAGQERRQY APPPQPAMSA TALLQKAAQM GAAATNASLL  420
RGLGIVSSSS SSAQPDNMQW GHRQMEPENA SVTAGLGLGL PCDGGSGLKE LMMGTPSVFG  480
PKHATLDFLG LGMAAGGSPS GGLSALITSI GGGLDVAAAA ASFGGGEFSG KDMRRS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	3e-35	140	208	3	71	Zinc finger protein JACKDAW
5b3h_F	3e-35	140	208	3	71	Zinc finger protein JACKDAW
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pth.12952	0.0	bud\| leaf

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Strongly up-regulated during seed development. {ECO:0000269\|PubMed:21571950}.
Uniprot	TISSUE SPECIFICITY: At 3 days post anthesis (DPA), expressed in the chalazal endosperm region. By 6 DPA, expressed in the endosperm and embryo. In fully germinated seed, strongest expression in the root tip and not detected in the cotyledons. In 4-days old seedlings, restricted to the vasculature of the cotyledons, the shoot apical meristem region, and the root tip. By 8 days, restricted to newly emerged leaves. {ECO:0000269\|PubMed:21571950}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269\|PubMed:21571950, ECO:0000269\|PubMed:25035403}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.007G028800.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006380751.1	0.0	protein indeterminate-domain 2
Swissprot	Q9LVQ7	0.0	IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBL	U5G4W2	0.0	U5G4W2_POPTR; Uncharacterized protein
STRING	POPTR_0007s12520.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2218	32	86
Representative plant	OGRP95	16	242

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66730.1	1e-142	C2H2-like zinc finger protein

Link Out ? help Back to Top
Phytozome	Potri.007G028800.1
Entrez Gene	18101209

Publications ? help Back to Top
Fukazawa J, et al. DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis. Plant Cell, 2014. 26(7): p. 2920-38 [PMID:25035403] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]