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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.007G024100.1 | ||||||||
Common Name | POPTR_0007s12970g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | ZF-HD | ||||||||
Protein Properties | Length: 332aa MW: 36754.2 Da PI: 9.5709 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 102.3 | 3.2e-32 | 114 | 169 | 3 | 59 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 ++rY+eClkNhAas+Ggh++DGCgEfmp geegt +++kCaAC+CHRnFHRre + Potri.007G024100.1 114 STRYRECLKNHAASMGGHVLDGCGEFMPG-GEEGTLESFKCAACECHRNFHRREIDG 169 679*************************9.999********************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 1.5E-29 | 115 | 167 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 5.8E-30 | 116 | 167 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 6.0E-22 | 117 | 173 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 27.647 | 117 | 166 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 2.4E-29 | 257 | 329 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 9.23E-19 | 260 | 328 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 8.633 | 265 | 329 | IPR001356 | Homeobox domain |
TIGRFAMs | TIGR01565 | 2.2E-27 | 267 | 324 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 332 aa Download sequence Send to blast |
MELRGQDKGI VMPKSLNYNP PDNRDSSSKV PNSAPARRDH HHAAAVLPHA LGHQSLYQQQ 60 QQQQAQKPTT DLDLTPDPVQ ATTPIATTGA INTAQTPSRS LSRSPPPTPA SSASTRYREC 120 LKNHAASMGG HVLDGCGEFM PGGEEGTLES FKCAACECHR NFHRREIDGE PQCVANSTLY 180 KISNGQRNIL PPQHLVTSCA PRQPFPHQHH RYHQGTLSAY TTPIAPMIMS FGRGDGGGAA 240 AESSSEDLNM YQSNLQGQAS VQPSMSRKRF RTKFSQDQKD KMTEFAEKLG WRIQKQDEQE 300 VQQFCSQVGV KRKVFKVWMH NNKQAMKKKQ V* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 4e-22 | 268 | 325 | 18 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pth.12066 | 0.0 | bud| catkin |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.007G024100.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF148735 | 0.0 | EF148735.1 Populus trichocarpa x Populus deltoides clone WS0137_D14 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006380765.1 | 0.0 | zinc-finger homeodomain protein 6 | ||||
Refseq | XP_024461197.1 | 0.0 | zinc-finger homeodomain protein 6 | ||||
TrEMBL | U5GAU4 | 0.0 | U5GAU4_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0007s12970.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF206 | 34 | 253 |
Representative plant | OGRP91 | 16 | 237 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75240.1 | 6e-58 | homeobox protein 33 |
Link Out ? help Back to Top | |
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Phytozome | Potri.007G024100.1 |
Entrez Gene | 7473187 |