PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.007G023600.1
Common NamePOPTR_0007s13020g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 389aa    MW: 43583 Da    PI: 5.839
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.007G023600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.81.9e-08228275455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +h+ +Er RR++i +++  L++l+P +    +k    a +L + ++Y++sLq
  Potri.007G023600.1 228 SHSLAERARREKISKKMKCLQDLVPGC----NKITGRAGMLDEIINYVQSLQ 275
                         8**************************....899*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.97E-7222279No hitNo description
SuperFamilySSF474598.11E-15222292IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-15224290IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.627224274IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.4E-6228275IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-8230280IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009299Biological ProcessmRNA transcription
GO:0009735Biological Processresponse to cytokinin
GO:0009826Biological Processunidimensional cell growth
GO:0043425Molecular FunctionbHLH transcription factor binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MLSQKHIFCM DMSVLERQQA RFKWLLLLQQ ENNYVNQYNS IESCSMPPDL FHGFFDHESM  60
NGDRIDWKEQ PEIYLGNNDL PKYGVFSLNG TEFVANNKMD FGEAEVTARS LEIDHCLSRT  120
SSCQIGVVEA AKIEEVVAVN VAGEDVTLME NKQSNHGRRD NSNKRKAEFI AAEQSDDKIK  180
LEEDEPKVKE KGSPEISADS SKENQKTSAL PKTDYIHVRA RRGQATDSHS LAERARREKI  240
SKKMKCLQDL VPGCNKITGR AGMLDEIINY VQSLQRQVEF ISMKLAAVNR RPDTDNVSGK  300
ESPAYIASFP AATMSSTIAN LPHLQLNLVQ QQATSSRPKA LTDTFQLVPE KATSSSALIN  360
DLCLDHSLAQ VQPFWDADSQ NLQNLGFH*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00106PBMTransfer from AT2G18300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.007G023600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002310242.20.0transcription factor HBI1
TrEMBLB9HF170.0B9HF17_POPTR; BHLH family protein
STRINGPOPTR_0007s13020.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1781856
Representative plantOGRP5816313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18300.22e-55bHLH family protein