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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.007G010500.1 | ||||||||
Common Name | POPTR_0007s14360g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | bHLH | ||||||||
Protein Properties | Length: 230aa MW: 25449.4 Da PI: 9.8104 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 42 | 1.6e-13 | 61 | 107 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+++E +RR+riN+ f +Lr++lP++ K++Ka++Le++++++k+L Potri.007G010500.1 61 KKHSMAESNRRSRINTQFTTLRTILPNL-----IKVNKASVLEETIRCVKEL 107 68*************************9.....6****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.068 | 58 | 107 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.9E-10 | 61 | 107 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.70E-9 | 61 | 112 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 6.0E-13 | 62 | 116 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 6.41E-13 | 62 | 125 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.4E-9 | 64 | 113 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF55021 | 2.24E-6 | 146 | 218 | No hit | No description |
Gene3D | G3DSA:3.30.70.260 | 7.6E-7 | 149 | 218 | No hit | No description |
CDD | cd04873 | 5.06E-6 | 149 | 208 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence Send to blast |
MALQQMHDVQ PLSSHSNSAG PCSNQDDFRQ ALLNSINETT YNNSMAKQLI SEEESKLVAA 60 KKHSMAESNR RSRINTQFTT LRTILPNLIK VNKASVLEET IRCVKELTNT VSELKEIYGG 120 GRLECVFPGG ADKLRIGSCE GKGQEVVKVV FSCDDKRKLL SDVARAVRSV KGKVVRAEMV 180 TMGGRTKCVL WVQGINGNEE LEMLRRVLNA LTEKPNMART CNRPKLTLL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.007G010500.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024461149.1 | 1e-169 | transcription factor bHLH131 | ||||
Swissprot | P0CB25 | 1e-42 | BH131_ARATH; Transcription factor bHLH131 | ||||
TrEMBL | A0A2K1ZM96 | 1e-168 | A0A2K1ZM96_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0007s14360.1 | 1e-164 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF12611 | 30 | 32 |
Representative plant | OGRP14910 | 3 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38070.1 | 3e-42 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.007G010500.1 |
Entrez Gene | 7495549 |