PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.007G007400.1
Common NamePOPTR_0007s14690g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family AP2
Protein Properties Length: 675aa    MW: 74801.1 Da    PI: 7.005
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.007G007400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.93.9e-16328387155
                 AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         s+y+GV++++++gr++A+++d  ++  g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  Potri.007G007400.1 328 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqsRKgRQVYLGGYDMEEKAARAYDLAALKYWG 387
                         78*******************988886678446*************************98 PP
2AP2461.3e-14430481155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Potri.007G007400.1 430 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDVAAIKFRG 481
                         57****************988532...5************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.7E-13328387IPR001471AP2/ERF domain
CDDcd000184.93E-20328395No hitNo description
SuperFamilySSF541717.19E-15328395IPR016177DNA-binding domain
SMARTSM003809.5E-27329401IPR001471AP2/ERF domain
PROSITE profilePS5103218.413329395IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.7E-14329395IPR001471AP2/ERF domain
PRINTSPR003674.1E-6330341IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-17430490IPR016177DNA-binding domain
PfamPF008475.4E-10430481IPR001471AP2/ERF domain
CDDcd000181.70E-25430491No hitNo description
SMARTSM003801.3E-34431495IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.9E-18431489IPR001471AP2/ERF domain
PROSITE profilePS5103219.032431489IPR001471AP2/ERF domain
PRINTSPR003674.1E-6471491IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 675 aa     Download sequence    Send to blast
MKSMNNDDGN NNHNADWLGF SLSPQMNMEV PSGTDHHQQT RSASAAVPTA IPTNLFHSQL  60
PHLNCGLYYG VEGENGGFYS PLHVMPLKSD GSPCMMGALT RTQPQATMVT TSTPKLEDFF  120
VGATMGTHHY ESNDREAMAL SLDSSTTMYY HQDTDHEPNN QICLNHLEQN PRQQHHHHIQ  180
VQQYPYYSNF RNNEMSVGED AKQMTQASDC NLLLPNMGDD GITGMKNWVS RNHQSNHVME  240
QKMLRCVVEN GGESGPNISA MTYGDLQCLS LSMSPGSQSS CVTGTSQQIS PSVTDCAAME  300
TKKRGPGKGD QKQIVHRKSI DTFGQRTSQY RGVTRHRWTG RYEAHLWDNS CKKEGQSRKG  360
RQVYLGGYDM EEKAARAYDL AALKYWGPST HINSPLENYQ KEIEEMKNMT RQEYVAHLRR  420
KSSGFSRGAS IYRGVTRHHQ HGRWQARIGR VAGNKDLYLG TFSTQEEAAE AYDVAAIKFR  480
GVSAVTNFDI TRYDVERIMA SNTLLAGELA RRNKDIGPCN DATPNHNPST HKSENESDWK  540
MVFCQSSQQL DHKASNAVDN YKTQAFSLSP ENVIANDSIF SLHQQQVEDS SNMGTHMSNA  600
SSLVTSLCSS REGSPDRANL PVLFGMPPSA ASKLYTSPIC DVNSWIPAAA AAAQLRPAAV  660
SLPHTPVFAA WTDA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.55530.0bud
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.007G007400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2105550.0AC210555.1 Populus trichocarpa clone POP104-J03, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006380824.20.0AP2-like ethylene-responsive transcription factor ANT isoform X2
TrEMBLA0A2K1ZM010.0A0A2K1ZM01_POPTR; Uncharacterized protein
STRINGPOPTR_0007s14690.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF91634114
Representative plantOGRP11217209
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.11e-137AP2 family protein