PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.007G003200.1 | ||||||||
Common Name | POPTR_0007s15110g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | G2-like | ||||||||
Protein Properties | Length: 484aa MW: 52901 Da PI: 6.2712 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 106.3 | 1.7e-33 | 264 | 318 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr+rWtpeLHerFveav++L G+ekAtPk +l+lm+vkgLt++hvkSHLQkYRl Potri.007G003200.1 264 KPRMRWTPELHERFVEAVNKLDGAEKATPKGVLKLMNVKGLTIYHVKSHLQKYRL 318 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.005 | 261 | 321 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.65E-18 | 262 | 318 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.4E-32 | 263 | 319 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 4.2E-25 | 264 | 319 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.4E-9 | 266 | 317 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 2.7E-22 | 354 | 399 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 484 aa Download sequence Send to blast |
MNQHAVVSVT KSETSKGVTQ PFCTTLFPIQ NSSSSKSDCQ TSLTGESSSP RPSPLIRTES 60 LGSPSKMQLS TAQHQMCCLK FGPDSPLSPT SHVQSSKSTF QRSSVFCTSL YLSSSSISET 120 NRQLGNLPFL PHPPTYSHSV SATDSTKSPL LFSEDLSNQC DEEHSDAFMK DFLNLSGNAS 180 EGSFHGMNYT GGNLELTEQL ELQFLSDELE IAITDHGENP GLDEIYGTHE TSSKPATGFA 240 CNQDSPSVDA LSSHPSPGSS TAHKPRMRWT PELHERFVEA VNKLDGAEKA TPKGVLKLMN 300 VKGLTIYHVK SHLQKYRLAK YLPEKKEEKK ASCSEEKKVA SINIDGDVKK KGTIQITEAL 360 RMQMEVQKQL HEQLEVQRTL QLRIEEHARY LQKIIEQQNA GSALLSPKSL SASTNPPKDS 420 ELPPPSPSAV AESKTDLSSP LPSSKHKAAD SDNFEKQTSE KRIRLEEKSE SASEDAVVED 480 PPV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 3e-26 | 264 | 321 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 3e-26 | 264 | 321 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 3e-26 | 264 | 321 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 3e-26 | 264 | 321 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 3e-26 | 264 | 321 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 3e-26 | 264 | 321 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 3e-26 | 264 | 321 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 3e-26 | 264 | 321 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00354 | DAP | Transfer from AT3G13040 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.007G003200.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002310903.3 | 0.0 | myb family transcription factor PHL6 | ||||
Refseq | XP_024461415.1 | 0.0 | myb family transcription factor PHL6 | ||||
Swissprot | Q949U2 | 1e-137 | PHL6_ARATH; Myb family transcription factor PHL6 | ||||
TrEMBL | A0A2K1ZLT0 | 0.0 | A0A2K1ZLT0_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0007s15110.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13469 | 19 | 25 | Representative plant | OGRP78 | 17 | 262 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13040.2 | 1e-110 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.007G003200.1 |
Entrez Gene | 7497753 |
Publications ? help Back to Top | |||
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