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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Potri.006G275900.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family |
MYB |
Protein Properties |
Length: 353aa MW: 39578.2 Da PI: 6.089 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Potri.006G275900.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 54.8 | 2.2e-17 | 63 | 110 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g+WT+ Ede lvd+vk +G g W+ I ++ g++R++k+c++rw +yl
Potri.006G275900.1 63 KGAWTPLEDEMLVDYVKIHGEGKWSNIVKETGLKRCGKSCRLRWMNYL 110
79********************************************97 PP
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2 | Myb_DNA-binding | 48.7 | 1.8e-15 | 116 | 159 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
rg+ + +E++l+++++k+lG++ W++Ia +++ gRt++++k++w++
Potri.006G275900.1 116 RGNISDDEEDLIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWHT 159
78999*****************.*********.***********97 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 353 aa
Download sequence Send
to blast |
MSDEVALFIA WTLHAIFGMY YWFDAIPKKS SRTSSRGHRA VASSEIQQEM GRKPRCSADG 60 MNKGAWTPLE DEMLVDYVKI HGEGKWSNIV KETGLKRCGK SCRLRWMNYL RPDIKRGNIS 120 DDEEDLIIRL HKLLGNRWSL IAGRLPGRTD NEIKNYWHTN IAKKAQHSQS RKQPGVDRKQ 180 IASGSENGAT ASNFKNQTIE SQYCTTGVVV PSTALQENNM AQDHLVSTLA MAPSNTHHEN 240 ESSSKGLASG DNDNLSNILM DFHYMEDFYK ILDSDFPKLS DLNDITSTAN HSNNTIQVDG 300 DHYSVSINGC NPREIAGFSE LLEADWTSNK CVQAEQGFDF MSLLSFLDLT DE*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | FJ573150 | 0.0 | FJ573150.1 Populus tremuloides MYB transcription factor R2R3-like protein (MYB097) mRNA, complete cds. |