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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.006G262100.1 | ||||||||
Common Name | POPTR_0006s27800g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | ARR-B | ||||||||
Protein Properties | Length: 689aa MW: 75483.6 Da PI: 6.3607 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 89.7 | 2.6e-28 | 197 | 250 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr++W+ eLH++Fv av+qL G++kA+Pk+il+lm+v+ Lt+e+v+SHLQkYRl Potri.006G262100.1 197 KPRVVWSVELHRKFVAAVNQL-GIDKAVPKKILDLMNVEKLTRENVASHLQKYRL 250 79*******************.********************************8 PP | |||||||
2 | Response_reg | 76.5 | 9.6e-26 | 21 | 129 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHH CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalea 89 vl vdD+p+ + ll+++l++ +y v++++++ al +l+e++ +Dl++ D+ mp+mdG++ll+ e++lp+i+++a+g+++++ + Potri.006G262100.1 21 VLAVDDDPTCLLLLETLLRRCQY-TVTTTSQAITALSMLRENKnkFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSANGDPKLVMKG 109 799********************.***************888888*******************87754.558****************** PP HHTTESEEEESS--HHHHHH CS Response_reg 90 lkaGakdflsKpfdpeelvk 109 + Ga d+l Kp+ +eel + Potri.006G262100.1 110 ITHGACDYLLKPVRIEELKN 129 *****************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF036392 | 1.6E-164 | 1 | 688 | IPR017053 | Response regulator B-type, plant |
SuperFamily | SSF52172 | 2.7E-36 | 18 | 146 | IPR011006 | CheY-like superfamily |
Gene3D | G3DSA:3.40.50.2300 | 1.5E-42 | 18 | 161 | No hit | No description |
SMART | SM00448 | 2.7E-32 | 19 | 131 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 43.161 | 20 | 135 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 5.3E-23 | 21 | 129 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 2.56E-23 | 22 | 135 | No hit | No description |
SuperFamily | SSF46689 | 7.53E-20 | 194 | 254 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.5E-30 | 194 | 255 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 12.269 | 194 | 253 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 5.0E-25 | 197 | 250 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.2E-6 | 199 | 249 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0010082 | Biological Process | regulation of root meristem growth | ||||
GO:0010380 | Biological Process | regulation of chlorophyll biosynthetic process | ||||
GO:0031537 | Biological Process | regulation of anthocyanin metabolic process | ||||
GO:0048367 | Biological Process | shoot system development | ||||
GO:0080022 | Biological Process | primary root development | ||||
GO:0080036 | Biological Process | regulation of cytokinin-activated signaling pathway | ||||
GO:0080113 | Biological Process | regulation of seed growth | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 689 aa Download sequence Send to blast |
MTVEQGIGDS NIDQFPIGMR VLAVDDDPTC LLLLETLLRR CQYTVTTTSQ AITALSMLRE 60 NKNKFDLVIS DVHMPDMDGF KLLELVGLEM DLPVIMLSAN GDPKLVMKGI THGACDYLLK 120 PVRIEELKNI WQHVIRRRKY DNKDRNSSDN RDKPNQGSSE AIPDQKLNKK RKDQNEDEDE 180 DRDENEHENE DPATQKKPRV VWSVELHRKF VAAVNQLGID KAVPKKILDL MNVEKLTREN 240 VASHLQKYRL YLKRISTVAN QQANMVAALG SSDASYLQMN SMNGMGLHNL AGSGQFHNTP 300 FRSLPSSGML SRLNSPAVLG IRGLPSPGVI RLGHVQSAPH SANGLSHFQP VGHPGNNGNI 360 LQGMPMSLEL DQIQSNKGVN YVRELPTHLD DTASFPVSSG STDMKIIAGS SNSPFVGVSG 420 KPLMLEGHGQ GLQDGQKFGN QSSLAAGSLD PGYSSHFPDH GRCNDNWSNA VQSNGVQSSS 480 FTLNDCFKQS TLHPSSIRDS MSTMALQSRN NHCDVSSIST LPIHLQDSKA DLQCQVATMS 540 SDAGQIINNG QLGWDDHRQD DPYHANGISN SINSAIPING NGSLVGQSLD PNNMIFQRTR 600 SFSSAGQSNF VDTSLMKHNE VESSAMETLV RSKDGYLLGQ QKQQDSYVSN NFGSLEDLVS 660 VMVKQEQDKV KLPEGDFGCG GYSLRTCI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 5e-26 | 195 | 256 | 3 | 64 | ARR10-B |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.006G262100.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FN908144 | 0.0 | FN908144.1 Populus x canadensis mRNA for putative B-type response regulator 22 (rr22 gene), cultivar Dorskamp. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024459850.1 | 0.0 | two-component response regulator ARR12 isoform X1 | ||||
TrEMBL | A0A2K2A8M0 | 0.0 | A0A2K2A8M0_POPTR; Two-component response regulator | ||||
STRING | POPTR_0006s27800.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF956 | 34 | 112 |
Representative plant | OGRP292 | 17 | 120 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G25180.1 | 1e-125 | response regulator 12 |
Link Out ? help Back to Top | |
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Phytozome | Potri.006G262100.1 |
Entrez Gene | 7489144 |