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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.006G259400.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | TALE | ||||||||
Protein Properties | Length: 433aa MW: 48185.5 Da PI: 6.3431 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 23.4 | 1e-07 | 369 | 402 | 21 | 54 |
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 k +yp++e++++L +++gL+ +q+ +WF N+R + Potri.006G259400.1 369 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 402 469*****************************87 PP | |||||||
2 | ELK | 28.8 | 2.8e-10 | 323 | 344 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELKh+L+++Y+++++++++E++ Potri.006G259400.1 323 ELKHELKQGYKEKIVDIREEIL 344 9*******************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 1.6E-19 | 156 | 200 | IPR005540 | KNOX1 |
Pfam | PF03790 | 3.9E-17 | 158 | 199 | IPR005540 | KNOX1 |
SMART | SM01256 | 3.7E-28 | 211 | 266 | IPR005541 | KNOX2 |
Pfam | PF03791 | 7.4E-20 | 217 | 265 | IPR005541 | KNOX2 |
SMART | SM01188 | 6.1E-4 | 323 | 344 | IPR005539 | ELK domain |
PROSITE profile | PS51213 | 9.969 | 323 | 343 | IPR005539 | ELK domain |
Pfam | PF03789 | 1.0E-6 | 323 | 344 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 11.726 | 343 | 406 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.7E-11 | 345 | 410 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 4.71E-16 | 345 | 408 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 6.58E-12 | 346 | 407 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.5E-25 | 350 | 407 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 1.2E-17 | 363 | 402 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009416 | Biological Process | response to light stimulus | ||||
GO:0009722 | Biological Process | detection of cytokinin stimulus | ||||
GO:0071345 | Biological Process | cellular response to cytokine stimulus | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 433 aa Download sequence Send to blast |
MAFHHNLPSQ DLPLHHFTDQ QATENTTAPP NWLNTALLRS QQPPQQRTHH HFTDNNNTNN 60 FLNLHSATPS TTATTSDSAS HNPTQWLSRS SSSLLNRNHS TVIDDVSAAA AGGDHPIIAS 120 MSQESSELKS MNKSEGETMV ESGGGGGEAV VNWQNAKCKA DILAHPLYDQ LLSAHVACLR 180 IATPVDQLPR IDAQLAQSQQ VVAKYSALGS HQGLVPDDKE LDQFMTHYFL LLCSFKEQLQ 240 QHVRVHAMEA VMACWEIEQS LQSLTGVSPG EGTGATMSDD DEDQVDSEAN MFDGSLEGVD 300 TMGFGPLVPT ESERSLMERV RQELKHELKQ GYKEKIVDIR EEILRKRRAG KLPGDTTSVL 360 KAWWQSHSKW PYPTEEDKAR LVQETGLQLK QINNWFINQR KRNWHSNPST STVLKSKRKR 420 SNAGDNNGDR FV* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 399 | 419 | RKRNWHSNPSTSTVLKSKRKR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.006G259400.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KP770020 | 0.0 | KP770020.1 Populus tomentosa TALE transcription factor (Potri.006G259400) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024459660.1 | 0.0 | homeobox protein knotted-1-like 3 isoform X1 | ||||
Swissprot | P48000 | 0.0 | KNAT3_ARATH; Homeobox protein knotted-1-like 3 | ||||
TrEMBL | A0A2K2A8G8 | 0.0 | A0A2K2A8G8_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0018s02210.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1017 | 34 | 108 |
Representative plant | OGRP167 | 17 | 148 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G25220.1 | 0.0 | KNOTTED1-like homeobox gene 3 |
Link Out ? help Back to Top | |
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Phytozome | Potri.006G259400.1 |
Publications ? help Back to Top | |||
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