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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.006G237500.1 | ||||||||
Common Name | POPTR_0006s25390g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 845aa MW: 92883.3 Da PI: 6.3469 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 59.3 | 6.3e-19 | 21 | 79 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+e+Le+l++++++ps +r++L +++ +++ +q+kvWFqNrR +ek+ Potri.006G237500.1 21 KYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECpilsHIEPKQIKVWFQNRRCREKQ 79 5679*****************************************************97 PP | |||||||
2 | START | 183.9 | 8.8e-58 | 166 | 373 | 2 | 204 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EE CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..ga 90 +aee+++++++ka+ ++ Wv+++ +++g++++ +++ s++++g a+ra+g+v +++ v+e+l+d++ W ++++++++++++s+g g+ Potri.006G237500.1 166 IAEETLAQFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGVAARACGLVGLEPT-RVAEILKDRPSWFRDCRAVDVVNALSTGsgGT 255 7899******************************************************.8888888888********************** PP EEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXX CS START 91 lqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlp 177 ++l +++l+a+++l+p Rdf+ +Ry+ l++g++v++++S++++q+ p+ ++++vRae+lpSg+li+p+++g+s +++v+h+dl+ +++ Potri.006G237500.1 256 IELLYMQLYAPTTLAPaRDFWLLRYTSVLEDGSLVVCERSLNNTQNGPSmppTQHFVRAEMLPSGYLIRPCEGGGSIIHVVDHMDLEPWSV 346 ***********************************************99999*************************************** PP HHHHHHHHHHHHHHHHHHHHHHTXXXX CS START 178 hwllrslvksglaegaktwvatlqrqc 204 +++lr+l++s++ ++kt++a+l++++ Potri.006G237500.1 347 PEVLRPLYESSTLLAQKTTMAALRHLR 373 ***********************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 15.629 | 16 | 80 | IPR001356 | Homeobox domain |
SMART | SM00389 | 5.2E-16 | 18 | 84 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 4.02E-17 | 20 | 84 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.68E-16 | 21 | 81 | No hit | No description |
Pfam | PF00046 | 1.5E-16 | 22 | 79 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 2.6E-18 | 23 | 79 | IPR009057 | Homeodomain-like |
CDD | cd14686 | 1.16E-6 | 73 | 112 | No hit | No description |
PROSITE profile | PS50848 | 25.633 | 156 | 384 | IPR002913 | START domain |
CDD | cd08875 | 9.12E-81 | 160 | 374 | No hit | No description |
SMART | SM00234 | 6.5E-44 | 165 | 375 | IPR002913 | START domain |
SuperFamily | SSF55961 | 1.65E-38 | 165 | 376 | No hit | No description |
Gene3D | G3DSA:3.30.530.20 | 1.6E-24 | 165 | 371 | IPR023393 | START-like domain |
Pfam | PF01852 | 2.0E-55 | 166 | 373 | IPR002913 | START domain |
Pfam | PF08670 | 1.4E-50 | 703 | 843 | IPR013978 | MEKHLA |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008284 | Biological Process | positive regulation of cell proliferation | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0010067 | Biological Process | procambium histogenesis | ||||
GO:0010072 | Biological Process | primary shoot apical meristem specification | ||||
GO:0010089 | Biological Process | xylem development | ||||
GO:0045597 | Biological Process | positive regulation of cell differentiation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 845 aa Download sequence Send to blast |
MMAVSSTCKD GSTKITMDNG KYVRYTPEQV EALERLYHEC PKPSSMRRQQ LIRECPILSH 60 IEPKQIKVWF QNRRCREKQR KEASRLQAVN RKLTAMNKLL MEENDRLQKQ VSQLVYENSY 120 FRQQTQNATN LATTDTSCES VVTSGQHHLT PQHPPRDASP AGLLSIAEET LAQFLSKATG 180 TAVEWVQMPG MKPGPDSIGI VAISHGCTGV AARACGLVGL EPTRVAEILK DRPSWFRDCR 240 AVDVVNALST GSGGTIELLY MQLYAPTTLA PARDFWLLRY TSVLEDGSLV VCERSLNNTQ 300 NGPSMPPTQH FVRAEMLPSG YLIRPCEGGG SIIHVVDHMD LEPWSVPEVL RPLYESSTLL 360 AQKTTMAALR HLRQVSQEVS QPNVTGWGRR PAALRALSQR LSKGFNEAVN GFADEGWSML 420 ESDGIDDVTV LVNSSPAKMM GVNFSYANGF PSMSNAVLCA KASMLLQNVP PAILLRFLRE 480 HRSEWADSGI DAYAAAAVKA GPCSLPMSRA GNFGGQVILP LAHTIEHEEA STSFMEVIKL 540 ENMGYREDML MPGDVFLLQL CSGVDENAVG TCAELIFAPI DASFSDDAPI IPSGFRIIPL 600 DSGMDASSPN RTLDLASALE VGPAGNRASG DLSGRSGCTK SVMTIAFQFA FEMHLQENVT 660 SMARQYVRSI IASVQRVALA LSPSHFGSHA GFRPPPGTPE AHTLARWICE SYRCYLGVEL 720 LKNEGSESIL KTLWHHSDAL MCCSLKTLPV FTFANQAGLD MLETTLVALQ DITLEKIFDD 780 NGRKTLYSEF PQIMQQGFMC LQGGICLSSM GRPVSYERAV AWKVLNEEES AHCICFMFIN 840 WSFV* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pth.17182 | 0.0 | stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed in the procambial cells and the developing vascular system of embryos, roots and shoots. Expressed during the early stages of revascularization after cutting experiment. {ECO:0000269|PubMed:12447534, ECO:0000269|PubMed:8575317}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the regulation of vascular development. May promote differentiation of precambial and cambial cells. {ECO:0000269|PubMed:11402194, ECO:0000269|PubMed:15598805}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.006G237500.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin. Repressed by miR165. {ECO:0000269|PubMed:17237362, ECO:0000269|PubMed:8575317}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY919623 | 0.0 | AY919623.1 Populus trichocarpa class III HD-Zip protein 8 (HB8) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024459734.1 | 0.0 | homeobox-leucine zipper protein ATHB-8 | ||||
Refseq | XP_024459736.1 | 0.0 | homeobox-leucine zipper protein ATHB-8 | ||||
Refseq | XP_024459737.1 | 0.0 | homeobox-leucine zipper protein ATHB-8 | ||||
Swissprot | Q39123 | 0.0 | ATHB8_ARATH; Homeobox-leucine zipper protein ATHB-8 | ||||
TrEMBL | A0A2K2A796 | 0.0 | A0A2K2A796_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0006s25390.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1946 | 33 | 87 |
Representative plant | OGRP651 | 16 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32880.1 | 0.0 | homeobox gene 8 |
Link Out ? help Back to Top | |
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Phytozome | Potri.006G237500.1 |
Entrez Gene | 7470738 |