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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.006G234300.1 | ||||||||
Common Name | POPTR_0006s25080g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | C3H | ||||||||
Protein Properties | Length: 391aa MW: 42667.9 Da PI: 7.86 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 22.7 | 1.8e-07 | 127 | 147 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C+ f++ G Ck Gd C FaHg Potri.006G234300.1 127 ACPEFRK-GGCKKGDACEFAHG 147 7******.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 6.775 | 74 | 111 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.2E-4 | 122 | 148 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.333 | 123 | 149 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.6E-4 | 127 | 149 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.4E-5 | 127 | 147 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 6.042 | 157 | 181 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 11 | 157 | 180 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009867 | Biological Process | jasmonic acid mediated signaling pathway | ||||
GO:0010150 | Biological Process | leaf senescence | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 391 aa Download sequence Send to blast |
MMMIGELSHH RSNPTVQIPQ WDPYEEQTTT SPSLSPIPTS PFTNFNALDS LTSLHRYLPS 60 NEPDPTFEDE LDLPVDAFSC DHFRMYEFKV KRCARGRSHD WTECPYAHPG EKARRRDPRR 120 YHYSGTACPE FRKGGCKKGD ACEFAHGVFE CWLHPARYRT QPCKDGPACR RRVCFFAHTP 180 EQLRLLPQQS PKGNGSGSGL GSGEYDFGSP VIHPFDSYMT KAGIFVSSPT SILTSPPVSP 240 PSDSPPMSPV SPQVIGGSGP GSLNSMSALL ASMRGLQVGK AKMGSPVGSW GVQSGFRFGS 300 PRGSSLRPGF CSLPSTPTRT MASRSGLSQL DIWGDGVTCE EEPAMERVES GRDLRAKIYA 360 KLSKENSVDR DRGDSGVSGP DVGWVSELVK * |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pth.4476 | 0.0 | bud |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.006G234300.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024460027.1 | 0.0 | zinc finger CCCH domain-containing protein 20 | ||||
Swissprot | Q9M0G2 | 1e-125 | C3H49_ARATH; Zinc finger CCCH domain-containing protein 49 | ||||
TrEMBL | B9HE04 | 0.0 | B9HE04_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0006s25080.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2056 | 31 | 76 |
Representative plant | OGRP1170 | 16 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29190.1 | 1e-103 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.006G234300.1 |
Entrez Gene | 7462281 |
Publications ? help Back to Top | |||
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