PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.006G234200.1
Common NamePOPTR_0006s25060g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 303aa    MW: 32910.1 Da    PI: 5.7164
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.006G234200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.32.4e-151462148
                        TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                        rg+W++eEd  l+ + + +G+g +W + +++ g++R++k+c++rw++yl
  Potri.006G234200.1 14 RGPWSPEEDATLKSYLETHGTGgNWIALPQKAGLKRCGKSCRLRWLNYL 62
                        89*********************************************97 PP
2Myb_DNA-binding461.2e-1469111246
                         SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         g +T+eEd ++  +  q+G++ W++Ia+ ++ gRt++++k++w++
  Potri.006G234200.1  69 GGFTEEEDNIICTLYSQMGSR-WSLIAAQLP-GRTDNDVKNYWNT 111
                         569******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.66962IPR017930Myb domain
SuperFamilySSF466892.31E-2711109IPR009057Homeodomain-like
SMARTSM007173.4E-111364IPR001005SANT/Myb domain
PfamPF002491.2E-141462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.8E-251569IPR009057Homeodomain-like
CDDcd001672.45E-81662No hitNo description
PROSITE profilePS5129423.72963117IPR017930Myb domain
SMARTSM007176.7E-1467115IPR001005SANT/Myb domain
PfamPF002497.0E-1369111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.8E-2570117IPR009057Homeodomain-like
CDDcd001674.20E-1171113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MGRAPCCDKA NVKRGPWSPE EDATLKSYLE THGTGGNWIA LPQKAGLKRC GKSCRLRWLN  60
YLRPDIKHGG FTEEEDNIIC TLYSQMGSRW SLIAAQLPGR TDNDVKNYWN TKLKKKILAG  120
KISLTIKNNP INAPVNVANI PAIPCSTSPI LYVPKAETES SVTFSDHYSL TQISGTLPAL  180
SDIGYEPIIN STAQNLSPNQ FQFSSFPGVI DMSEFSMNST HIVSPSQEGS SISDSSSLAM  240
DNKGLSVPST NGGLEDVGIF MDSEPGFPSD FFNGLLLQDK ASEVATNCYQ YFAGFGYVDI  300
KP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-25141177108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.006G234200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ4591454e-42AJ459145.1 Gossypium hirsutum partial myb117 gene, clone pGhMYB117.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002309524.10.0transcription factor RAX2
TrEMBLB9HE030.0B9HE03_POPTR; Uncharacterized protein
STRINGPOPTR_0006s25060.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13034340
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49690.14e-76myb domain protein 84