PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.006G229200.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | GATA | ||||||||
Protein Properties | Length: 262aa MW: 29718.3 Da PI: 7.14 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 31.3 | 2.8e-10 | 222 | 242 | 1 | 21 |
GATA 1 CsnCgttkTplWRrgpdgnkt 21 Cs C+tt+TplWR+gp+g+k Potri.006G229200.2 222 CSDCNTTSTPLWRSGPRGPKV 242 *******************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50114 | 9.658 | 216 | 239 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 4.75E-5 | 216 | 240 | No hit | No description |
SMART | SM00401 | 5.3E-4 | 216 | 260 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 1.4E-7 | 220 | 242 | IPR013088 | Zinc finger, NHR/GATA-type |
Pfam | PF00320 | 1.1E-7 | 222 | 242 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0009416 | Biological Process | response to light stimulus | ||||
GO:0009735 | Biological Process | response to cytokinin | ||||
GO:0009740 | Biological Process | gibberellic acid mediated signaling pathway | ||||
GO:0009910 | Biological Process | negative regulation of flower development | ||||
GO:0010187 | Biological Process | negative regulation of seed germination | ||||
GO:0010380 | Biological Process | regulation of chlorophyll biosynthetic process | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045944 | Biological Process | positive regulation of transcription from RNA polymerase II promoter | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0000977 | Molecular Function | RNA polymerase II regulatory region sequence-specific DNA binding | ||||
GO:0001085 | Molecular Function | RNA polymerase II transcription factor binding | ||||
GO:0001228 | Molecular Function | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding | ||||
GO:0003682 | Molecular Function | chromatin binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 262 aa Download sequence Send to blast |
MTDQMKKEKS WAIFPLTDVP CLLFFILFHI VHLYWTAGAA AKLSLPHPPS PSMTPAYLNP 60 ASSSFPFVDL REEQNLQLFL SPHQAATSLS GPTNFFNTSA HDHQRETKPG ESRQHDNQEV 120 DMYNISHGGS SSSFQPEVND HNYNSNFHNL SSSKMEDGAE ESGESSVKWM PSKMRLMQKM 180 TNSNCSETDH MPMKFMLKFH NQQYQNNEIN SSSNSNSNIR VCSDCNTTST PLWRSGPRGP 240 KVLFIYTRIV QCFNMYIKTV Y* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pth.17499 | 0.0 | leaf |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.006G229200.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF147614 | 0.0 | EF147614.1 Populus trichocarpa clone WS0123_N07 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002308561.2 | 1e-140 | GATA transcription factor 21 | ||||
TrEMBL | A9PGX1 | 1e-138 | A9PGX1_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0006s24560.1 | 1e-139 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G26150.1 | 2e-12 | cytokinin-responsive gata factor 1 |
Link Out ? help Back to Top | |
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Phytozome | Potri.006G229200.2 |