PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.006G228300.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family LBD
Protein Properties Length: 143aa    MW: 16458.9 Da    PI: 9.2984
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.006G228300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260127.27.8e-4051041100
              DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 
                         aCaaCk +rrkC +dC++apyfpae++++f++vhklFG +n+++ll++lp e+r+da+ s+vyeA+ar+rdPv G+++++++l q+l+ lk
  Potri.006G228300.1   5 ACAACKNQRRKCDEDCFVAPYFPAEKTRDFEAVHKLFGLHNIVNLLQNLPLEKRSDAVISMVYEANARVRDPVTGCTRILSELMQRLNALK 95 
                         7****************************************************************************************** PP

              DUF260  92 aelallkee 100
                         ael+l++++
  Potri.006G228300.1  96 AELNLVQNK 104
                         *****9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089124.5094105IPR004883Lateral organ boundaries, LOB
PfamPF031951.1E-385102IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 143 aa     Download sequence    Send to blast
MKRPACAACK NQRRKCDEDC FVAPYFPAEK TRDFEAVHKL FGLHNIVNLL QNLPLEKRSD  60
AVISMVYEAN ARVRDPVTGC TRILSELMQR LNALKAELNL VQNKNAYYRT LKQQQPGQQN  120
MVHNAGFVDF LRENNNKTDF WN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A9e-28610412110LOB family transfactor Ramosa2.1
5ly0_B9e-28610412110LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.006G228300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024458812.12e-96LOB domain-containing protein 12
SwissprotQ9SHE92e-30LBD4_ARATH; LOB domain-containing protein 4
TrEMBLA0A3N7F5N55e-95A0A3N7F5N5_POPTR; Uncharacterized protein
STRINGPOPTR_0006s24470.19e-75(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2312934
Representative plantOGRP6016318
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31320.18e-33LOB domain-containing protein 4