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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Potri.006G193700.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family |
HD-ZIP |
Protein Properties |
Length: 327aa MW: 36355.9 Da PI: 9.7234 |
Description |
HD-ZIP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Potri.006G193700.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Homeobox | 55.7 | 8.2e-18 | 171 | 225 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
rk+ +++k+q Lee F+++++++ +++ LAk+l+L rqV vWFqNrRa+ k
Potri.006G193700.1 171 RKKLRLSKDQSAFLEESFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 225
678899***********************************************98 PP
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2 | HD-ZIP_I/II | 126.7 | 9.8e-41 | 171 | 261 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91
+kk+rlsk+q+++LEesF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l++en+rL+ke +eLr +l
Potri.006G193700.1 171 RKKLRLSKDQSAFLEESFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTKENRRLQKELQELR-AL 260
69*************************************************************************************9.55 PP
HD-ZIP_I/II 92 k 92
k
Potri.006G193700.1 261 K 261
5 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 327 aa
Download sequence Send
to blast |
MELALSLGDT SKPFKFLDKT PKLSSKDLGF CMGLGSGFTA STRSHDKLGS HENNHQEDER 60 RVSSDPPLQL VLLPFSPVPR RHQPPSKTRF PWLTDNLVSE PGSTEGSGRG FDVNRLSMDD 120 ADEGAALSSP NSAASSFQMD FGIRSGRGNK RDLEAIEASR ASDDEENGLT RKKLRLSKDQ 180 SAFLEESFKE HSTLNPKQKL ALAKQLNLRP RQVEVWFQNR RARTKLKQTE VDCEYLKRCC 240 ETLTKENRRL QKELQELRAL KTSQPFYMQL PATTLTMCPS CERVATTTTT TNPSTSTTTS 300 KTLSLPAKPR LFPSSHGQVQ AHQAAS*
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Nucleic Localization
Signal ? help
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No. |
Start |
End |
Sequence |
1 | 169 | 175 | TRKKLRL |
2 | 219 | 227 | RRARTKLKQ |
Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor. {ECO:0000250}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AM262944 | 1e-106 | AM262944.1 Phillyrea latifolia partial mRNA for type II homeodomain-leucine zipper protein precursor (ophh-61B gene). |