PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.006G190000.1
Common NamePOPTR_0006s20440g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family TALE
Protein Properties Length: 339aa    MW: 38563.1 Da    PI: 6.1961
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.006G190000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox22.91.5e-072893212254
                         SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
            Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                          +yp++e++++L +++gL+ +q+ +WF N+R +
  Potri.006G190000.1 289 WPYPTEEDKARLVQETGLQLKQINNWFINQRKR 321
                         59*****************************87 PP
2ELK22.33.2e-08242263122
                 ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                         ELKh+L++ Y+++++++++E++
  Potri.006G190000.1 242 ELKHELKQDYKEKIVDIREEIL 263
                         9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012553.4E-1777121IPR005540KNOX1
PfamPF037903.9E-1779120IPR005540KNOX1
SMARTSM012568.2E-26130185IPR005541KNOX2
PfamPF037911.5E-18134184IPR005541KNOX2
PfamPF037891.5E-4242263IPR005539ELK domain
PROSITE profilePS512139.865242262IPR005539ELK domain
SMARTSM011880.0049242263IPR005539ELK domain
PROSITE profilePS5007111.677262325IPR001356Homeobox domain
SMARTSM003896.0E-11264329IPR001356Homeobox domain
SuperFamilySSF466895.56E-16264326IPR009057Homeodomain-like
CDDcd000861.06E-10265324No hitNo description
Gene3DG3DSA:1.10.10.605.5E-25269325IPR009057Homeodomain-like
PfamPF059201.4E-17282321IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MAFQDHHHTP QEMTFQLPQH HHLSASPSTG PTWLSNAVLR RHDDVLTQTR IEKPENNTNN  60
GSEEELIDSV SDNWERAKCK AEILGHPLYE QLLAAHVACL RIATPVDQLA RIDTQLAQSQ  120
DVVAKYSGVG RSHVVDEKEL DQFMTHYVIL LCSFKDQLQQ HVRVHAMEAV MACWELEQSL  180
QSLTGVSPGE GTGATMSDDD DDQADSDANL YDGNLDGLDT MGFGPLVPTE TERSLMERVR  240
QELKHELKQD YKEKIVDIRE EILRKRRAGK LPGDTTSLLK AWWQTHSKWP YPTEEDKARL  300
VQETGLQLKQ INNWFINQRK RNWHSSPSGS TSKSKRKK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1318337RKRNWHSSPSGSTSKSKRKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.15890.0bud| catkin
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.006G190000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP7699990.0KP769999.1 Populus tomentosa Homeobox protein knotted-1-like 3 (Potri.006G190000) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002309315.20.0homeobox protein knotted-1-like LET12
SwissprotP480001e-164KNAT3_ARATH; Homeobox protein knotted-1-like 3
TrEMBLB9HAN90.0B9HAN9_POPTR; Uncharacterized protein
STRINGPOPTR_0018s12200.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101734108
Representative plantOGRP16717148
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.11e-153KNOTTED1-like homeobox gene 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]