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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Potri.006G188000.1 |
Common Name | POPTR_0006s20220g |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family |
ARR-B |
Protein Properties |
Length: 684aa MW: 74838.3 Da PI: 4.9935 |
Description |
ARR-B family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Potri.006G188000.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | G2-like | 87.1 | 1.7e-27 | 209 | 262 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
kpr++W+ +LH++Fv av+q+ G +kA+Pk+il+lm+v+gLt+e+v+SHLQk+Rl
Potri.006G188000.1 209 KPRVVWSVDLHQKFVAAVNQM-GLDKAVPKKILDLMNVDGLTRENVASHLQKFRL 262
79*******************.********************************8 PP
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2 | Response_reg | 82.5 | 1.3e-27 | 24 | 132 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHH CS
Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalea 89
+l vdD+p+ +++l+++l+k y ev+++ ++ ale+l+e++ +Dl++ D++mp+mdG++ll+ e++lp+i++++hg++e + +
Potri.006G188000.1 24 ILAVDDDPICLKVLENLLRKCLY-EVTTTNQAVTALEMLRENRnkYDLVISDVNMPDMDGFKLLELVGL-EMDLPVIMLSSHGDKEFVYKG 112
799********************.***************999889*******************87754.558****************** PP
HHTTESEEEESS--HHHHHH CS
Response_reg 90 lkaGakdflsKpfdpeelvk 109
+ Ga d+l Kp+ +eel +
Potri.006G188000.1 113 VTHGAVDYLLKPVRMEELKN 132
*****************986 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0000160 | Biological Process | phosphorelay signal transduction system |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 684 aa
Download sequence Send
to blast |
MMAVDDQRGG NSVNEKKFPV GMRILAVDDD PICLKVLENL LRKCLYEVTT TNQAVTALEM 60 LRENRNKYDL VISDVNMPDM DGFKLLELVG LEMDLPVIML SSHGDKEFVY KGVTHGAVDY 120 LLKPVRMEEL KNIWQHVIRR KKWYPEDQNR SPNQDKGDDG AGEGEQGVTS TGSADQNGKL 180 NRKRKDQDDE DEEEGEDGDD NEVSGNQKKP RVVWSVDLHQ KFVAAVNQMG LDKAVPKKIL 240 DLMNVDGLTR ENVASHLQKF RLYLKRLSSG GNQQGNMVSA FGAKDSSYLQ MSSVDGFGDF 300 RSMHGPGRLS TTSLSSYPSG TFLGRLNSPG GLTLQGIASS GLHQPGLLPT NQGTNLFQGI 360 SSALEPKQLQ MKSINHIGEF NQKGDTAGFT LASCFPDVKV TIGSLSNTIS GATSSPPILQ 420 ANPQQNHNRG SLVTQSSLSM PSLNQESFDV GVQGSSNFLN HSRCDDNWQG AVQLSTFPSL 480 PIGEPFRHDQ LPSSTLRGNI SSTTCHIVNS PIDFSSTGSL TAPLEDSRVD MQGQTDFIGN 540 IFQNTTNYIS KNRWEENSQN YNPGLNGSFG AMNSLVSGNG SSGALNQSMD QRKRFGASMI 600 GQSNSGTLSM FQHPDVENFA LDPKMRSNED VILAQTKSQN GFVQNNYESL DDIMNEMIKQ 660 DQNDGSLMDG EFRFGSFSPG SCM*
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Functional Description ? help
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Source |
Description |
UniProt | Transcriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | HG518156 | 0.0 | HG518156.1 Populus x canadensis RR18 gene for response regulator, cultivar Dorskamp. |