PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

ERF

Protein Properties

Length: 288aa MW: 31296.2 Da PI: 5.7952

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.006G156600.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	56.3	8.2e-18	67	117	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + ++GVr + +g+Wv+eIr+p++ + r++lg+f t+e+Aa+a++ a+++++g Potri.006G156600.1 67 PVFRGVRMRT-WGKWVSEIREPRK---KNRIWLGTFSTPEMAARAHDVAALSIKG 117 579**998.******854...59********************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	8.4E-12	67	117	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	9.15E-21	68	125	IPR016177	DNA-binding domain
PROSITE profile	PS51032	22.629	68	125	IPR001471	AP2/ERF domain
SMART	SM00380	3.1E-34	68	131	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	1.1E-30	68	125	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.6E-9	69	80	IPR001471	AP2/ERF domain
CDD	cd00018	1.53E-30	69	125	No hit	No description
PRINTS	PR00367	1.6E-9	91	107	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 288 aa Download sequence Send to blast
MTDPLTSNSN SKKDSSSIYS YFSSPTPSST SSSGLSPNPV SKPDPEKNLR KPKRPRETNS 60 SNNSKHPVFR GVRMRTWGKW VSEIREPRKK NRIWLGTFST PEMAARAHDV AALSIKGNSA 120 ILNFPGLAGS LPRPASNSPR DVQAAAAKAA SMDFNSTVTT VTTNVCNDEN NSNNNSTASN 180 NNGSSSSQMT QSSSSSSSSS SSTVRVTSDV ATPEELSEIV ELPSLETSYE ESPEFVLFGD 240 SWPYINQSWC YEDYGVKSNG YFSDQYLSII PENNVITSGF ETLLWEH*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	5e-19	63	125	9	72	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.006G156600.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC217032	0.0	AC217032.1 Populus trichocarpa clone POP013-C12, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006381752.1	0.0	ethylene-responsive transcription factor ERF043
Swissprot	Q9M080	4e-54	ERF43_ARATH; Ethylene-responsive transcription factor ERF043
TrEMBL	U5GBE6	0.0	U5GBE6_POPTR; Uncharacterized protein
STRING	POPTR_0006s17670.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF192	34	263
Representative plant	OGRP6	16	1718

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32800.1	4e-49	ERF family protein

Link Out ? help Back to Top
Phytozome	Potri.006G156600.1
Entrez Gene	18100449

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]