PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.006G152700.5
Common NamePOPTR_0006s15740g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 458aa    MW: 51469.3 Da    PI: 7.0064
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.006G152700.5genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM114.89e-36471891128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......lelee....vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk. 79 
                         lp+G++F+Ptd+el+ e+L++kve+k+      +   +    +i+   +i++++P++Lp  v+ +  + +fF++ +k+y+tg+rk+r+++ 
  Potri.006G152700.5  47 LPAGVKFDPTDQELI-EHLEAKVEAKDmrshplI---DefipTIEGEdGICYTHPEKLP-GVTRDGLSRHFFHRPSKAYTTGTRKRRKIQt 132
                         799************.99*********5554442...143333666646**********.555666799******************7333 PP

                 NAM  80 .......sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                                + +W++tgk+++v++ +g+++g+kk+Lv+y   g+++++ekt+Wvmh+y+l
  Potri.006G152700.5 133 ecdlqggETRWHKTGKTRPVMV-NGKQKGCKKILVLYtnFGKNRRPEKTNWVMHQYHL 189
                         4555544778************.999***********5547999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-3843208IPR003441NAC domain
PROSITE profilePS5100533.02847208IPR003441NAC domain
PfamPF023652.6E-1648189IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 458 aa     Download sequence    Send to blast
MTTKSNMASI SSSNLIDAKL EEHQLCGSKQ CPGCGHKLEG KPDWLGLPAG VKFDPTDQEL  60
IEHLEAKVEA KDMRSHPLID EFIPTIEGED GICYTHPEKL PGVTRDGLSR HFFHRPSKAY  120
TTGTRKRRKI QTECDLQGGE TRWHKTGKTR PVMVNGKQKG CKKILVLYTN FGKNRRPEKT  180
NWVMHQYHLG QHEEEKEGEL VVSKIFYQTQ PRQCNYTDRS ATLGEGSGDP SSRRDSGSGS  240
CSSKEIIPQR DEISGTGPVA ASISSCTALD IHQLKSDHFG FTPFRKSFDE VGIREASVAR  300
EASASGTCDE IQEQHQRPHH VAHDPHQQQQ LQHHHHHQTV HHQIATAAFH ISRPSHPIST  360
IISPSPLHHT SIILDEDPYH VSRLMLQNEI QQQQHQQQQQ HHKLGGRSAS GLEELIMGCT  420
STDVKEESPI TNPQEAEWLK YSSFWPDPDN QDHHGLV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-134518913140Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the vascular cylinder of roots. Expressed in the differentiation zone of the root stele. {ECO:0000269|PubMed:25265867}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00460DAPTransfer from AT4G29230Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.006G152700.5
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB9707950.0AB970795.1 Populus tremula x Populus tremuloides PtxtNAC128 mRNA for NAC transcriptional factor, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002308301.10.0NAC domain-containing protein 75 isoform X1
RefseqXP_024458407.10.0NAC domain-containing protein 75 isoform X1
RefseqXP_024458409.10.0NAC domain-containing protein 75 isoform X1
SwissprotQ9M0F80.0NAC75_ARATH; NAC domain-containing protein 75
TrEMBLB9H8X70.0B9H8X7_POPTR; Uncharacterized protein
STRINGPOPTR_0006s15740.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29230.11e-171NAC domain containing protein 75
Publications ? help Back to Top
  1. Droc G, et al.
    OryGenesDB: a database for rice reverse genetics.
    Nucleic Acids Res., 2006. 34(Database issue): p. D736-40
    [PMID:16381969]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]