PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.006G148400.1
Common NamePOPTR_0006s15080g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C3H
Protein Properties Length: 929aa    MW: 101359 Da    PI: 8.4578
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.006G148400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.34e-06486507426
                         ---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                         ++Cr+f++ G C+ G +CkF+H+
  Potri.006G148400.1 486 SPCRHFLK-GRCREGQKCKFSHD 507
                         79******.*************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.601482509IPR000571Zinc finger, CCCH-type
SMARTSM003560.0038483508IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.15E-5484507IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.9E-4487507IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.695511538IPR000571Zinc finger, CCCH-type
SMARTSM003560.038511537IPR000571Zinc finger, CCCH-type
SMARTSM003560.19539563IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.63E-6540563IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-4541564IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.746541564IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 929 aa     Download sequence    Send to blast
MAETPLFTFS PLRKSHLKSQ TYRTLVRILS HPQLCQFVPP PPGNGGDGGP HVLGNQVCSR  60
HVELCHESLL DKNGQERGFS DTQAVINEVE NIMGIEEDEN LVIDQTACGT GLQDRDLIQA  120
QHLLIDELEH LMKGNVELVC HNNSGPVTKR NRNAAGDVVA VSNNQDEHFE RHPVVIKECR  180
GVGQLQLDEE TLCQNNKISS EVSKPVDNCE ESSLSRTNGL EVNNEMQQKE IQSDKSVCAD  240
ATMGYPPEDG EIEEREVSGE FEVDDGSVDM FSEDAVAPQE KKVDEKQASE AIIDKNRLPI  300
NEKNEANKKH SWFSSSMAYT VENAKDRREV EAQQRFSSEM ACKRKVVTYE DPILAEEGVW  360
CKKQKKCHGV REQNDGSAAK DQKRDSRVKE QKKGNVANDG VGCPVVCPNN LASFTENSDQ  420
TASANQGIVS KEKDAGLCNK KKRGPPSKEK KAKKKEKERK KRAEKNRQLG VKRMKLLPVL  480
NQKPVSPCRH FLKGRCREGQ KCKFSHDAIP LTKSEPCHHF ARHKCMKGDN CPYDHQLSKY  540
PCTNYVSKGY CIRGDSCMFS HKEDLASTSN VSNVCTPKVK PPSLPSTSNS KRQLDISGTS  600
NQTAKALPDS TGVISDDRRA ALNVAKTVQN LPALVPKGLS FLSGGKKSMV ESSPKTSSPS  660
LKSNVFVKVG NQIDQCASVT VQSCNEIPRK IPSVVAPKGI NFLSFGKAPL DKCSSTMKLK  720
SLAFNQGNGV NLFSSKNFAV HEEACSSSNK DNSVLVGKET HQSVSNMAAH GLNKMLQKTE  780
PTAFQDASAD SFRRNQQASL PLSSGSGVHA SVQESKIASN KHVELSALQG RLPASPLGSG  840
QSSDQLAHAC LKNKPISAQK ALMSTLAFAT KVESLMKMNQ STGGAFAVSS MVSKESRDST  900
TPRGLQIDSE KASKVLDFLS GIGGETKQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1440461KKRGPPSKEKKAKKKEKERKKR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.58600.0stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.006G148400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002309215.10.0uncharacterized protein LOC7497606
TrEMBLB9HDY40.0B9HDY4_POPTR; Uncharacterized protein
STRINGPOPTR_0006s15080.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66502323
Representative plantOGRP81611212