PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.006G145100.1
Common NamePOPTR_0006s14740g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NF-YA
Protein Properties Length: 342aa    MW: 37391.6 Da    PI: 9.3834
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.006G145100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA102.93e-32183239158
           CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                         d p+YVNaKQy++Il+RRq+Rakle+++kl  k+rkpylheSRh hAl+R RgsgGrF
  Potri.006G145100.1 183 DGPIYVNAKQYHGILRRRQSRAKLEAQNKL-VKNRKPYLHESRHIHALNRVRGSGGRF 239
                         57****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.5E-36181242IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115235.89182242IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006166.6E-24185207IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.5E-27185239IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860187207IPR018362CCAAT-binding factor, conserved site
PRINTSPR006166.6E-24216239IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MALRIQNLLK KNFDEPHFTV SCPSWWNSNE QHFSPSLSKN INFKVDSSPQ PYHEAKQLGL  60
NLPDQESSST LSIGQSHNEM SAMGGTNSQG QCISSESDES CGKGVEGKMR PVLLLSTPDG  120
VSNHSQADCS YSMVRTPYPC ADPYFGGLFN PYGPHAFIQP QMGSHMVGMT AGRVPLPLDL  180
ADDGPIYVNA KQYHGILRRR QSRAKLEAQN KLVKNRKPYL HESRHIHALN RVRGSGGRFL  240
STKKLQRSDP TSSHGQCNVL DTIHLHPKNN ASELESFQSR TGQSSASNTT RSDTTSVSNS  300
DVNFRQPDRG FSGIAAHLVG GRQINGGLMS SGNQHHASVV R*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A1e-19185244463NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.006G145100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002308270.10.0nuclear transcription factor Y subunit A-4 isoform X1
RefseqXP_024459824.10.0nuclear transcription factor Y subunit A-4 isoform X1
RefseqXP_024459825.10.0nuclear transcription factor Y subunit A-4 isoform X1
RefseqXP_024459826.10.0nuclear transcription factor Y subunit A-4 isoform X1
RefseqXP_024459827.10.0nuclear transcription factor Y subunit A-4 isoform X1
RefseqXP_024459828.10.0nuclear transcription factor Y subunit A-4 isoform X1
TrEMBLB9HDV60.0B9HDV6_POPTR; Uncharacterized protein
STRINGPOPTR_0006s14740.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF69493149
Representative plantOGRP6801672
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72830.11e-50nuclear factor Y, subunit A3