PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

ERF

Protein Properties

Length: 155aa MW: 17213.4 Da PI: 9.5634

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.006G138900.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	65.8	8.5e-21	14	64	2	56
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 +y+GVr +k +g+WvAeIr p++ r r++lg++ taeeAa+a++aa ++l+g+ Potri.006G138900.1 14 RYRGVRMRK-WGKWVAEIRQPNS---RNRIWLGSYNTAEEAARAYDAAVLCLRGP 64 7****99.******943...49**********************995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00380	1.2E-36	14	77	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	3.92E-23	14	72	IPR016177	DNA-binding domain
Pfam	PF00847	1.7E-14	14	63	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	7.2E-32	14	72	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	23.459	14	71	IPR001471	AP2/ERF domain
CDD	cd00018	2.71E-29	15	71	No hit	No description
PRINTS	PR00367	1.4E-10	15	26	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.4E-10	37	53	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 155 aa Download sequence Send to blast
MVRERRERRV HNRRYRGVRM RKWGKWVAEI RQPNSRNRIW LGSYNTAEEA ARAYDAAVLC 60 LRGPSATFNF PSNVPEIPAT TEIMPPAQIR EVAFRHARRG STLEAAERIV ESGLFEGPSG 120 MSGEVYLGGE GDGAENLEGV SSGVCYQTSG VWTV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	1e-16	14	71	14	72	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.006G138900.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF155955	0.0	EF155955.1 Populus trichocarpa RAP2-like protein (RAP2L14) gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006381588.1	1e-109	ethylene-responsive transcription factor ERF016
Swissprot	Q9C591	4e-32	ERF16_ARATH; Ethylene-responsive transcription factor ERF016
Swissprot	Q9S7L5	3e-32	ERF18_ARATH; Ethylene-responsive transcription factor ERF018
TrEMBL	A0A3N7F6D8	1e-108	A0A3N7F6D8_POPTR; Uncharacterized protein
STRING	POPTR_0006s14110.1	2e-94	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF15296	8	13
Representative plant	OGRP6	16	1718

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G21960.1	1e-22	ERF family protein

Link Out ? help Back to Top
Phytozome	Potri.006G138900.1
Entrez Gene	18100304

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Chen HY, et al. ORA47 (octadecanoid-responsive AP2/ERF-domain transcription factor 47) regulates jasmonic acid and abscisic acid biosynthesis and signaling through binding to a novel cis-element. New Phytol., 2016. 211(2): p. 599-613 [PMID:26974851] Hickman R, et al. Architecture and Dynamics of the Jasmonic Acid Gene Regulatory Network. Plant Cell, 2017. 29(9): p. 2086-2105 [PMID:28827376]