 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Potri.006G135600.1 |
| Common Name | POPTR_0006s13790g |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
| Family |
bHLH |
| Protein Properties |
Length: 512aa MW: 54773.5 Da PI: 4.5978 |
| Description |
bHLH family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Potri.006G135600.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HLH | 36.5 | 8.6e-12 | 306 | 351 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
h+++Er RR++i +++ +L+el+P++ K++Ka++L + +eY+k Lq
Potri.006G135600.1 306 HSIAERLRREKIAERMKNLQELVPNS-----NKVDKASMLDEIIEYVKFLQ 351
99***********************7.....5******************9 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0045944 | Biological Process | positive regulation of transcription from RNA polymerase II promoter |
| GO:0005634 | Cellular Component | nucleus |
| GO:0001046 | Molecular Function | core promoter sequence-specific DNA binding |
| GO:0001228 | Molecular Function | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 512 aa
Download sequence Send
to blast |
MMDEYLNHLI SSSSLVDGDV KESSSWVCSE PNQPNAFLPT SLELYQDDKK NSPVSMISSN 60
QSVESLATQD TSSVVLGSES DYAVDKVLIS EQARLQNDCQ NCNGNPSPDG MARGNLKFGN 120
TGLQCNGILP TLSSLNYPNQ LPIVGDLTSY LSFSEASNAG CNGREQSEYL RSLKNLQNLS 180
SIPQLWPSQS YEGVSSLPPL MGQDRIEGSG LRGGNLDDDM HIMGKGYMGM DEILRLDKLS 240
ASPTTEGKED LQSCPFSSGI AEPNVNMSMN QLSSMPQTTS AAPVEGCNGT GKTRVRARRG 300
HATDPHSIAE RLRREKIAER MKNLQELVPN SNKVDKASML DEIIEYVKFL QLQVKVLSMS 360
RLGAAGAVIP LLTDGQPEGH NSLSLSPSAG LGIDISPSAD QIAFEQEVLK LLESDVTMAM 420
QYLQSKGLCL MPIALAAAIS SVKASLSGTT SEERKNNGYT SGLVSSSSSI TGIDTHPMSN 480
DNNIATGTLS SKGMIVNGCN EVVKQEVLKN T*
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AM471797 | 7e-36 | AM471797.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X221977.7, clone ENTAV 115. |
