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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Potri.006G133200.3 |
Common Name | POPTR_0006s13550g |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family |
WRKY |
Protein Properties |
Length: 428aa MW: 46546.5 Da PI: 9.1487 |
Description |
WRKY family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Potri.006G133200.3 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | WRKY | 103.5 | 1.2e-32 | 196 | 252 | 3 | 60 |
-SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60
DgynWrKYGqK+vkgse+prsYY+Ct+++Cpvkkkvers d+++ ei+Y+geHnh+k
Potri.006G133200.3 196 DGYNWRKYGQKQVKGSEYPRSYYKCTYPNCPVKKKVERSF-DGQIAEIVYKGEHNHSK 252
9***************************************.***************85 PP
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2 | WRKY | 32.3 | 2e-10 | 394 | 414 | 2 | 22 |
--SS-EEEEEEE--TT-SS-E CS
WRKY 2 dDgynWrKYGqKevkgsefpr 22
Dg++WrKYGqK vkg+++pr
Potri.006G133200.3 394 GDGFRWRKYGQKIVKGNPYPR 414
5*******************9 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 428 aa
Download sequence Send
to blast |
MEIKESERVV IAKPVASRPS YSNFTSFSEL LAGAINTTPS NVCSGTAVAA IRPKTVRFRP 60 LVNRAPGALV SSQAGLSGTA VSNSFNKVSS TDSKATIIYK PQAKLVSKAT VSLLANMGNF 120 NTNSQQMLQP VETRPQLSKQ DKHNFSSQLT SNLHQNIPSP AEADHTTEPL RLTSLNQEED 180 PKTLSHASNG DRPSYDGYNW RKYGQKQVKG SEYPRSYYKC TYPNCPVKKK VERSFDGQIA 240 EIVYKGEHNH SKPQPPKRNS SGTQGLSDGN APDRNSIPLW SNQLNERNEG SEGREENQNE 300 IGLPVHSIYQ GKAPPSYDPA GTGTINAGTG TSDNSCGVSG ECDDGSKGLE GANDEPKSKR 360 RKTEIQSTEG GMSGEGVQEP RVVVQSSTDS EILGDGFRWR KYGQKIVKGN PYPRLRPNDL 420 FEMYIAS*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | EF179608 | 0.0 | EF179608.1 (Populus tomentosa x P. bolleana) x P. tomentosa clone 01 WRKY transcription factor pseudogene, partial sequence. |