 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Potri.006G129300.1 |
| Common Name | POPTR_0006s13130g |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
| Family |
C2H2 |
| Protein Properties |
Length: 513aa MW: 55603.4 Da PI: 9.6197 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Potri.006G129300.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 16.1 | 3.1e-05 | 67 | 89 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
+ C++C+k F r nL+ H r H
Potri.006G129300.1 67 FICEICNKGFQRDQNLQLHRRGH 89
89*******************88 PP
|
| 2 | zf-C2H2 | 12.7 | 0.00038 | 143 | 165 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
+kC++C+k + +s+ k H +t+
Potri.006G129300.1 143 WKCEKCSKKYAVQSDWKAHSKTC 165
58*****************9998 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0010075 | Biological Process | regulation of meristem growth |
| GO:0045604 | Biological Process | regulation of epidermal cell differentiation |
| GO:0048364 | Biological Process | root development |
| GO:0051302 | Biological Process | regulation of cell division |
| GO:0003676 | Molecular Function | nucleic acid binding |
| GO:0042803 | Molecular Function | protein homodimerization activity |
| GO:0046872 | Molecular Function | metal ion binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 513 aa
Download sequence Send
to blast |
MMSGDAFSLP SSIAGFAQDQ NNANPNPSPK TNPNQAAKRK RNLPGTPDPD AEVIALSPKS 60
LMATNRFICE ICNKGFQRDQ NLQLHRRGHN LPWKLKQRTN KEVRKKVYIC PEKTCVHHDP 120
SRALGDLTGI KKHFSRKHGE KKWKCEKCSK KYAVQSDWKA HSKTCGTREY KCDCGTLFSR 180
KDSFITHRAF CDALAEESAR ITSVPAAANL NFRNDTVDLP HGFPDRPGVP DIAGIPQFNS 240
GFGPDFSGMT PGNSLGADQQ KPGLSLWLNQ ATSPISPNLN LYVPSSSSGL PEMVQMGSAN 300
LYGSSSTANF GNLTLSGLPH GLKEEGSSKA NMVNTSASLY SDSIQNKQSK PAAVPNMSAT 360
ALLQKAAQMG STRSNQSFFG NNYGLMNCSS SSPTTNPISL NQNPNELHQV FQNVKQTAAE 420
SLTTTNSTVA MSDAMMGTSS NLDQLMMQTS GKLQNDQTQL KHQRGSNSIE SGLTRDFLGM 480
SSESSRPFLP QDLAKFASIS SAMSLNHFTV NP*
|
| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 93 | 105 | KLKQRTNKEVRKK |
| Expression --
Description ? help
Back to Top |
| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Start to accumulate during the 16- to 32-cell stage of embryogenesis. {ECO:0000269|PubMed:17785527}. |
| Uniprot | TISSUE SPECIFICITY: Expressed in the quiescent center, the ground tissue stem cells and to a lesser extent in mature cortex and endodermis cells. {ECO:0000269|PubMed:17785527}. |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription factor that, together with BIB, regulates tissue boundaries and asymmetric cell division by a rapid up-regulation of 'SCARECROW' (SCR), thus controlling the nuclear localization of 'SHORT-ROOT' (SHR) and restricting its action (PubMed:17785527, PubMed:25829440). Binds DNA via its zinc fingers (PubMed:28211915, PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). Confines CYCD6 expression to the cortex-endodermis initial/daughter (CEI/CEID) tissues (PubMed:25829440). Required for radial patterning and stem cell maintenance (PubMed:17785527). Counteracted by 'MAGPIE' (MGP) (PubMed:17785527). Binds to the SCR and MGP promoter sequences (PubMed:21935722). Controls position-dependent signals that regulate epidermal-cell-type patterning (PubMed:20356954). {ECO:0000269|PubMed:17785527, ECO:0000269|PubMed:20356954, ECO:0000269|PubMed:21935722, ECO:0000269|PubMed:24821766, ECO:0000269|PubMed:25829440, ECO:0000269|PubMed:28211915}. |
| Regulation -- Description ? help
Back to Top |
| Source |
Description |
| UniProt | INDUCTION: Not regulated by SCR and SHR. {ECO:0000269|PubMed:21935722}. |
| Publications
? help Back to Top |
- Moreno-Risueno MA, et al.
Transcriptional control of tissue formation throughout root development.
Science, 2015. 350(6259): p. 426-30
[PMID:26494755] - Hirano Y, et al.
Structure of the SHR-SCR heterodimer bound to the BIRD/IDD transcriptional factor JKD.
Nat Plants, 2017. 3: p. 17010
[PMID:28211915] - Kobayashi A,Miura S,Kozaki A
INDETERMINATE DOMAIN PROTEIN binding sequences in the 5'-untranslated region and promoter of the SCARECROW gene play crucial and distinct roles in regulating SCARECROW expression in roots and leaves.
Plant Mol. Biol., 2017. 94(1-2): p. 1-13
[PMID:28324206] - Long Y, et al.
In vivo FRET-FLIM reveals cell-type-specific protein interactions in Arabidopsis roots.
Nature, 2017. 548(7665): p. 97-102
[PMID:28746306] - Bustillo-Avendaño E, et al.
Regulation of Hormonal Control, Cell Reprogramming, and Patterning during De Novo Root Organogenesis.
Plant Physiol., 2018. 176(2): p. 1709-1727
[PMID:29233938]
|
