PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.006G125800.1
Common NamePOPTR_0006s12770g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family TCP
Protein Properties Length: 199aa    MW: 21323.8 Da    PI: 7.0328
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.006G125800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP110.42.6e-3452119673
                 TCP   6 drhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec 73 
                         ++++++hTkv+gR+RRvR++a++aar+F+L++eLG+ +d++tieWLl++a+++i+++tgt+++++   
  Potri.006G125800.1  52 SQSKDRHTKVNGRGRRVRMPALTAARVFQLTRELGHRSDGETIEWLLRNAEASIIAATGTGTIPSIPI 119
                         678*********************************************************99998443 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.6E-2953127IPR005333Transcription factor, TCP
PROSITE profilePS5136926.99454108IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MVLYNLSSTS NNHHHQQNSN LNNNNHVVPT TIPAASSGSD SKLAHPRKST ASQSKDRHTK  60
VNGRGRRVRM PALTAARVFQ LTRELGHRSD GETIEWLLRN AEASIIAATG TGTIPSIPIS  120
TTVGSAPTSA SPLSVSGEVH PAIDAGPDGF SLTEASCRLD LDYRHMPFTA LLLKPLSENV  180
DLEAEEGRQE EVIGEQKM*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.37810.0bud
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.006G125800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006381427.21e-145transcription factor TCP11
TrEMBLA0A2K2A1871e-143A0A2K2A187_POPTR; Uncharacterized protein
STRINGPOPTR_0006s12770.11e-143(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38193363
Representative plantOGRP9221459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37000.12e-31TCP family protein