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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.006G125400.1 | ||||||||
Common Name | POPTR_0006s12730g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | MYB_related | ||||||||
Protein Properties | Length: 785aa MW: 87059.3 Da PI: 7.1656 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 29.9 | 1.3e-09 | 49 | 91 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT +E+e + +a +q G++ +++I r+++ + q++++++ + Potri.006G125400.1 49 AWTHQEEESFFNALRQVGKN-FEKITRHVQ-SKNKDQVRHYYYRL 91 6*****************99.*********.***********976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.21E-11 | 41 | 96 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 7.7E-6 | 44 | 94 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 15.001 | 45 | 96 | IPR017884 | SANT domain |
SMART | SM00717 | 1.0E-6 | 46 | 94 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.98E-6 | 49 | 92 | No hit | No description |
Pfam | PF00249 | 5.6E-7 | 49 | 91 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003682 | Molecular Function | chromatin binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 785 aa Download sequence Send to blast |
MEPQVSLDSE RHLHRNSSIQ VGDPGVTSST PDRVEPRQPE KRPTRQWAAW THQEEESFFN 60 ALRQVGKNFE KITRHVQSKN KDQVRHYYYR LVRRMNKLLG PGLCLDAKNS KDTNAAMLRW 120 WSLLAKYSCK ASKLHLKPRR FKIFVEALEN QLLKDRRKNV RKRSSQGENG SPTTPSIITN 180 QNRASGHDTR TVKLVLVDSQ NIQKLGGGKG SLKRNVNLGV IRNNNKGDST AMKPARQRRK 240 PASSAAYKKW EKAAIAGVSL VADAAEHLER TAPDKEFEHD QGQNGLDSVE NVLPHLPASL 300 LHYVESSAHN NMKLKLQLFP IDDGTRRALE MDKHNPHLEL TLSTRKKISS VLEHLNRKWG 360 NSTVASGELM LFPYVVNREN LVGYQRWTQD SLVSAADVYL SIGSPPVFRL RYGWFSNANF 420 ASMTLRAPST YSCLTDGGNE KGKAMDSVST TEPSTGDQFL EDPSRDCPTS MNSNHASTPH 480 SAGVSNETNE FIAIGPINNL VKSFDPAANT SWHRTETDDR TSTQQLEDVD GLRLSNVNVL 540 SAGEWADSLT DVSIGDLLSE LPHEADFNCV EPPIVQSNQC LQQIPFSCDS FDAAIAAHIS 600 RHQSKVGFVS SVTSHTSSIW DGEETCDAFA FQRNHSLRKE VTTSAVASPQ VGKQMDRTSS 660 IASGAFLEEL PDFVGPMDYP TGEDRMCLSD LQVVNNQAKN FNGLTDIYWP DSLGLLDLDI 720 PSSKYHAEDL ILSDSLGGLN HLIASSLDAF QNCSFFGLNK KDSTSTVEAR ETTSFSDFKI 780 GSGI* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in flowers, roots and leaves. {ECO:0000269|PubMed:15047893}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.006G125400.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024460382.1 | 0.0 | TSL-kinase interacting protein 1 isoform X1 | ||||
Refseq | XP_024460383.1 | 0.0 | TSL-kinase interacting protein 1 isoform X1 | ||||
Refseq | XP_024460384.1 | 0.0 | TSL-kinase interacting protein 1 isoform X1 | ||||
Swissprot | Q8LJT8 | 0.0 | TKI1_ARATH; TSL-kinase interacting protein 1 | ||||
TrEMBL | A0A2K2A181 | 0.0 | A0A2K2A181_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0006s12730.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9883 | 25 | 31 |
Representative plant | OGRP2164 | 10 | 15 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G36960.2 | 0.0 | TSL-kinase interacting protein 1 |
Link Out ? help Back to Top | |
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Phytozome | Potri.006G125400.1 |
Entrez Gene | 18100166 |