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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.006G124200.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | E2F/DP | ||||||||
Protein Properties | Length: 359aa MW: 38753.1 Da PI: 6.3582 | ||||||||
Description | E2F/DP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | E2F_TDP | 83.8 | 1.4e-26 | 105 | 187 | 2 | 71 |
E2F_TDP 2 keksLrlltqkflklleksee.givtlnevakeLvse................dvknkrRRiYDilNVLealnliekkekneirwkg 71 ++++Lr+++ k ++ek+e+ g++t+neva+eLv+e d+kn+rRR+YD+lNVL+al++i+k +k+ei+wkg Potri.006G124200.1 105 SGRGLRQFSIK---VCEKVESkGTTTYNEVADELVAEfadpsnsvstpdqqqyDEKNIRRRVYDALNVLMALDIISK-DKKEIQWKG 187 689********...*****999*******************************************************.*******98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF009404 | 5.9E-136 | 1 | 358 | IPR015648 | Transcription factor DP |
Gene3D | G3DSA:1.10.10.10 | 4.8E-45 | 100 | 193 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM01372 | 1.3E-34 | 104 | 187 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Pfam | PF02319 | 8.2E-25 | 106 | 187 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
SuperFamily | SSF46785 | 5.85E-21 | 107 | 188 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
CDD | cd14458 | 1.13E-43 | 192 | 295 | IPR014889 | Transcription factor DP, C-terminal |
SMART | SM01138 | 4.1E-75 | 194 | 356 | IPR014889 | Transcription factor DP, C-terminal |
SuperFamily | SSF144074 | 3.14E-43 | 194 | 309 | No hit | No description |
Pfam | PF08781 | 1.5E-41 | 195 | 307 | IPR014889 | Transcription factor DP, C-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0042023 | Biological Process | DNA endoreduplication | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 359 aa Download sequence Send to blast |
MVAGGAHLED GDRHPSSASR RGGGGGGGGG GATTGSWVSG QSVSTSGSVG SPSSRSEHAM 60 ATPASDSTFL RLNHLDIHAD DAATQDAAAN KKKKRGQRAV GADKSGRGLR QFSIKVCEKV 120 ESKGTTTYNE VADELVAEFA DPSNSVSTPD QQQYDEKNIR RRVYDALNVL MALDIISKDK 180 KEIQWKGLPR TSLSDIEELK VERLGLRNRI EKKAAYLQEL EEQFVGLQNL IQRNEQLYSS 240 GNAPSGGVSL PFILVQTRPH ATVEVEISED MQLVHFDFNS TPFELHDDNY VLKAMKFCER 300 PQSDDMAPNP PADGGEGSSM SSMYQPQILA SPSTNTPVRH PTSPPLPGII KARVKNEH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1cf7_B | 8e-35 | 98 | 192 | 1 | 93 | PROTEIN (TRANSCRIPTION FACTOR DP-2) |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed during the whole cell cycle. {ECO:0000269|PubMed:11669580}. | |||||
Uniprot | TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:16920782}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.006G124200.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF181998 | 0.0 | AF181998.1 Populus tremula x Populus tremuloides transcription factor DP1 (DP1) mRNA, complete cds. | |||
GenBank | AY307373 | 0.0 | AY307373.1 Populus tremula x Populus tremuloides DP1 (DP1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006381410.2 | 0.0 | transcription factor-like protein DPB | ||||
Swissprot | Q9FNY2 | 1e-158 | DPB_ARATH; Transcription factor-like protein DPB | ||||
TrEMBL | A0A2K2A149 | 0.0 | A0A2K2A149_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0006s12620.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3321 | 33 | 66 | Representative plant | OGRP2511 | 17 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03415.1 | 1e-137 | Transcription factor DP |
Link Out ? help Back to Top | |
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Phytozome | Potri.006G124200.1 |