PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.006G124200.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family E2F/DP
Protein Properties Length: 359aa    MW: 38753.1 Da    PI: 6.3582
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.006G124200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP83.81.4e-26105187271
             E2F_TDP   2 keksLrlltqkflklleksee.givtlnevakeLvse................dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                         ++++Lr+++ k   ++ek+e+ g++t+neva+eLv+e                d+kn+rRR+YD+lNVL+al++i+k +k+ei+wkg
  Potri.006G124200.1 105 SGRGLRQFSIK---VCEKVESkGTTTYNEVADELVAEfadpsnsvstpdqqqyDEKNIRRRVYDALNVLMALDIISK-DKKEIQWKG 187
                         689********...*****999*******************************************************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0094045.9E-1361358IPR015648Transcription factor DP
Gene3DG3DSA:1.10.10.104.8E-45100193IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.3E-34104187IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023198.2E-25106187IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467855.85E-21107188IPR011991Winged helix-turn-helix DNA-binding domain
CDDcd144581.13E-43192295IPR014889Transcription factor DP, C-terminal
SMARTSM011384.1E-75194356IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440743.14E-43194309No hitNo description
PfamPF087811.5E-41195307IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042023Biological ProcessDNA endoreduplication
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MVAGGAHLED GDRHPSSASR RGGGGGGGGG GATTGSWVSG QSVSTSGSVG SPSSRSEHAM  60
ATPASDSTFL RLNHLDIHAD DAATQDAAAN KKKKRGQRAV GADKSGRGLR QFSIKVCEKV  120
ESKGTTTYNE VADELVAEFA DPSNSVSTPD QQQYDEKNIR RRVYDALNVL MALDIISKDK  180
KEIQWKGLPR TSLSDIEELK VERLGLRNRI EKKAAYLQEL EEQFVGLQNL IQRNEQLYSS  240
GNAPSGGVSL PFILVQTRPH ATVEVEISED MQLVHFDFNS TPFELHDDNY VLKAMKFCER  300
PQSDDMAPNP PADGGEGSSM SSMYQPQILA SPSTNTPVRH PTSPPLPGII KARVKNEH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B8e-3598192193PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed during the whole cell cycle. {ECO:0000269|PubMed:11669580}.
UniprotTISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:16920782}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.006G124200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF1819980.0AF181998.1 Populus tremula x Populus tremuloides transcription factor DP1 (DP1) mRNA, complete cds.
GenBankAY3073730.0AY307373.1 Populus tremula x Populus tremuloides DP1 (DP1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006381410.20.0transcription factor-like protein DPB
SwissprotQ9FNY21e-158DPB_ARATH; Transcription factor-like protein DPB
TrEMBLA0A2K2A1490.0A0A2K2A149_POPTR; Uncharacterized protein
STRINGPOPTR_0006s12620.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33213366
Representative plantOGRP25111734
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-137Transcription factor DP