PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.006G123400.1
Common NamePOPTR_0006s12530g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 334aa    MW: 36889.3 Da    PI: 6.9732
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.006G123400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.83.3e-151462148
                        TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                        +g+W++eEd +l+++ ++ G+g +W + +++ g++R++k+c++rw++yl
  Potri.006G123400.1 14 KGPWSPEEDAKLKEYLEKQGTGgNWIALPQKAGLKRCGKSCRLRWLNYL 62
                        79*********************************************97 PP
2Myb_DNA-binding37.45.9e-1269111246
                         SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         g ++ +Ed ++  + +  G++ W+ Ia+ ++ gRt++++k++w++
  Potri.006G123400.1  69 GEFSDDEDRIICSLYANIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                         789******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.296962IPR017930Myb domain
SuperFamilySSF466892.38E-2611109IPR009057Homeodomain-like
SMARTSM007171.8E-111364IPR001005SANT/Myb domain
PfamPF002491.6E-141462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.5E-241569IPR009057Homeodomain-like
CDDcd001674.21E-81662No hitNo description
PROSITE profilePS5129421.69363117IPR017930Myb domain
SMARTSM007173.6E-1167115IPR001005SANT/Myb domain
PfamPF002491.0E-1069111IPR001005SANT/Myb domain
CDDcd001671.65E-770113No hitNo description
Gene3DG3DSA:1.10.10.602.1E-2370117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MGRAPCCDKA NMKKGPWSPE EDAKLKEYLE KQGTGGNWIA LPQKAGLKRC GKSCRLRWLN  60
YLRPNIKHGE FSDDEDRIIC SLYANIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLMGV  120
MNPIAQRKPH QAALFSSLLQ ATSLPSSPST LLSSSSSSFT CSNNSYYSNL TRSFTDPISF  180
SSSPMSTSSF ATASMLHPQE TFVGPMQNDQ VKDSLIMFGG EASCSSSDGS CNNQMSHVKE  240
EYEYSGGTNN NNEQMGLQNY LYNGVEDDQK LMVSSGAAAH GVLNGWIEKQ NGLWPGDNPL  300
DYGLEEIKQL ISTSSCNSFL FDENKTGEKV MYY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-25111174108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.006G123400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006381399.20.0transcription factor RAX2
TrEMBLA0A2K2A1180.0A0A2K2A118_POPTR; Uncharacterized protein
STRINGPOPTR_0006s12530.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13034340
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.14e-76myb domain protein 36