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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.006G122100.1 | ||||||||
Common Name | POPTR_0006s12400g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | MYB | ||||||||
Protein Properties | Length: 235aa MW: 27185.2 Da PI: 5.6656 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 45.5 | 1.7e-14 | 10 | 57 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W +eEde+l ++lG + W++Iar g+ R++k+c+ rw++yl Potri.006G122100.1 10 KGSWQEEEDERLTASATLLGERKWDSIARLSGLMRSGKSCRMRWLNYL 57 799*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 51.6 | 2.1e-16 | 63 | 108 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg ++eE++++++ + q+G++ W++Iar+++ gRt++++k++w++++ Potri.006G122100.1 63 RGHISAEEEQIIIQFHGQWGNK-WARIARRLP-GRTDNEIKNYWRTHM 108 67779*****************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.164 | 5 | 57 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.14E-25 | 8 | 104 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.5E-9 | 9 | 59 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.6E-11 | 10 | 57 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.6E-19 | 11 | 64 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 9.22E-7 | 12 | 57 | No hit | No description |
PROSITE profile | PS51294 | 24.986 | 58 | 112 | IPR017930 | Myb domain |
SMART | SM00717 | 3.0E-15 | 62 | 110 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.4E-14 | 63 | 107 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.2E-24 | 65 | 112 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.69E-10 | 67 | 108 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
MACQGDKLRK GSWQEEEDER LTASATLLGE RKWDSIARLS GLMRSGKSCR MRWLNYLQPN 60 LKRGHISAEE EQIIIQFHGQ WGNKWARIAR RLPGRTDNEI KNYWRTHMRK EIQTEEEGNF 120 QPKVYSAKPE LLYQNGDSTS AWKYSIRYYN SVDDNIGPAG SSLEHYELPS LTHMNSPYET 180 RQYDWIPKLS NDQSQTEVHG EGNGLDWCFC DPAWNSEDSD ISTLVSLGSL WDMN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 4e-25 | 8 | 112 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00406 | DAP | Transfer from AT3G53200 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.006G122100.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Accumulates in etiolated seedlings in dark conditions. {ECO:0000269|PubMed:9839469}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006381383.2 | 1e-176 | transcription factor MYB27 isoform X2 | ||||
Refseq | XP_024460171.1 | 1e-176 | transcription factor MYB27 isoform X1 | ||||
Swissprot | Q9SCP1 | 2e-55 | MYB27_ARATH; Transcription factor MYB27 | ||||
TrEMBL | A0A2K2A101 | 1e-174 | A0A2K2A101_POPTR; Uncharacterized protein | ||||
TrEMBL | A0A3N7F8B7 | 1e-174 | A0A3N7F8B7_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0006s12400.1 | 1e-174 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13169 | 26 | 31 |
Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G53200.1 | 8e-58 | myb domain protein 27 |
Link Out ? help Back to Top | |
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Phytozome | Potri.006G122100.1 |
Entrez Gene | 18100133 |
Publications ? help Back to Top | |||
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