PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.006G104200.1
Common NamePOPTR_0006s10510g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 437aa    MW: 48848.5 Da    PI: 5.6907
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.006G104200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.95e-1867125155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpseng....kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         ++y+GVr++  +g+WvAeIr+p++ +    k+  r +lg+f ta eAa a++ a+k ++g
  Potri.006G104200.1  67 CRYRGVRQRT-WGKWVAEIREPVKKCslmnKQgSRLWLGTFSTAIEAACAYDYAAKLMYG 125
                         78*****999.**********777555654346***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.0E-1167125IPR001471AP2/ERF domain
CDDcd000185.29E-2867134No hitNo description
SuperFamilySSF541714.32E-1968134IPR016177DNA-binding domain
PROSITE profilePS5103222.24768133IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-2868134IPR001471AP2/ERF domain
SMARTSM003801.4E-3268139IPR001471AP2/ERF domain
PRINTSPR003672.8E-96980IPR001471AP2/ERF domain
PRINTSPR003672.8E-999115IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 437 aa     Download sequence    Send to blast
MEDSLRQSSL LGFSSKDRKR RRNGCESIED TLARWKKHNK LQVSKVPGKG SKKGCMKGKG  60
GPENMNCRYR GVRQRTWGKW VAEIREPVKK CSLMNKQGSR LWLGTFSTAI EAACAYDYAA  120
KLMYGPNAIL NFPDYPVQSG NHLDNMSSSI TATETSSTES RTALDSYEDN KVDKLKINHC  180
GSREGNNQSG FSRICAVDES EEEVEKIRVA ESSAMELKAV EWNLTDDWKS SHHIEAEAPV  240
LREEIDGECA GILRSWGCYE HKKLKNEVVE SSMSTRLNEC VDSDYDMRTD HKPIYDVEKP  300
LMREAAAGEE FSGLKFSNYN PFETTHDHMN PGLCNQEIDI KPFIQDISDN SVLKGGGNYG  360
YDPAKVGSAS HLQSRRPSGL SCQLQTPSTN LPGSLSYFQE ADIGLGWNFD LSQQDFNGGL  420
VGEPGLLDQW YPELQF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-1769133360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11721RKRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.006G104200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1559600.0EF155960.1 Populus trichocarpa putative DRE-binding protein 4 (DREB4) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024459148.10.0uncharacterized protein LOC7468071 isoform X1
TrEMBLA0A2K2A0170.0A0A2K2A017_POPTR; Uncharacterized protein
STRINGPOPTR_0006s10510.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1711058
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38340.18e-22ERF family protein