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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Potri.006G101400.1 |
Common Name | POPTR_0006s10240g |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family |
Trihelix |
Protein Properties |
Length: 275aa MW: 32831 Da PI: 8.1173 |
Description |
Trihelix family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Potri.006G101400.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | trihelix | 76.6 | 3.9e-24 | 33 | 115 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
+W+ qe+++ + +r e++ ++ ++k++k lWe +sk+m+e+g++rs++qCk+kw+nl +ryk +++e + ++++p++++l+
Potri.006G101400.1 33 QWSIQETKEFLMIRAELDPTFMEKKRNKVLWEVISKNMKEKGYNRSAEQCKCKWKNLVTRYKGYETIEPES---MRHQFPFYNELQ 115
7********************************************************************84...34479*****98 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 275 aa
Download sequence Send
to blast |
MEGLHHHLHH HQQQIQQQHH ISVNVDTSDR FPQWSIQETK EFLMIRAELD PTFMEKKRNK 60 VLWEVISKNM KEKGYNRSAE QCKCKWKNLV TRYKGYETIE PESMRHQFPF YNELQAIFTS 120 RMQRMLWVDA EGAASGSKKK AAQLSSDEEE DNEEISEGEK GSSRKRIKKG KAVGGASCST 180 GNSNSLRETL EDFMKQQMQM EMQWRETFEA RENERRMKEM EWRQIMEGIE NERTTMDRRW 240 REIEEQRRVR EEARAEKRDA LITALLNKLR REDM*
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Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Predominantly expressed in roots and flower buds. {ECO:0000269|PubMed:15044016}. |
Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor that binds specifically to the core DNA sequence 5'-GTTAC-3'. {ECO:0000269|PubMed:15044016}. |