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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Potri.006G089600.1 |
Common Name | POPTR_0006s09040g |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family |
C2H2 |
Protein Properties |
Length: 302aa MW: 34113.1 Da PI: 8.5526 |
Description |
C2H2 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Potri.006G089600.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-C2H2 | 13.5 | 0.00022 | 55 | 77 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
y+C+ C + F++ L H+++H
Potri.006G089600.1 55 YSCSFCRREFRSAQALGGHMNVH 77
99*******************99 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
Protein Sequence Length: 302 aa
Download sequence Send
to blast |
MEQARYWMLT KQKHSLNSHF QASTNPSFDD SWEEQAFAED AAGPLGGCIW PPRSYSCSFC 60 RREFRSAQAL GGHMNVHRRD RARLKQPPSP HNEILQQEHQ SPHSHLQNPY KSFGFQYPSQ 120 LCNLVYSPNP NSDPGPIASP PSSSRVSTTP TQENCRIKGF FPPFSSFIVE EQQKRSPRSS 180 PPPRTKLATE RCYHISDLST EGEQNSRKVE SGCTGKVNRV KTDLSVSLNL VVRRTRPSIT 240 DSEEDPSSCK KRRIDKSSLP FSLKSNSVDK SEVLEISPCT VEELDLELRL GDRPKSYCHI 300 Y*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AC209099 | 0.0 | AC209099.1 Populus trichocarpa clone POP015-B18, complete sequence. |