PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.006G074900.4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | bHLH | ||||||||
Protein Properties | Length: 228aa MW: 25579.5 Da PI: 8.7972 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 41.7 | 2.1e-13 | 36 | 78 | 7 | 54 |
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 Er+RR+r+N++++ Lr ++P+ + K++Ka+i + A++YI++L Potri.006G074900.4 36 VSERNRRKRLNERLFALRAVVPNiS------KMDKASIIKDAIDYIQEL 78 57*********************66......****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 16.685 | 29 | 78 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.18E-17 | 30 | 93 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.60E-12 | 32 | 83 | No hit | No description |
SMART | SM00353 | 1.2E-14 | 35 | 84 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.0E-16 | 35 | 93 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.4E-11 | 36 | 78 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF55021 | 9.61E-5 | 149 | 218 | No hit | No description |
CDD | cd04873 | 0.00266 | 152 | 215 | No hit | No description |
PROSITE profile | PS51671 | 8.627 | 153 | 225 | IPR002912 | ACT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008152 | Biological Process | metabolic process | ||||
GO:0016597 | Molecular Function | amino acid binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence Send to blast |
MRSLIGSWAI DEAFSGYYDS SSPDGAASSA ASKNIVSERN RRKRLNERLF ALRAVVPNIS 60 KMDKASIIKD AIDYIQELHK QERRIQAEIL ELESGKLKKD PGVDVFEQEL PALLRSKKKK 120 IDDRFCDFGG SKNFSRIELL ELRVAYMGEK TLLVSLTCSK RTDTMVKLCE VFESLRVKII 180 TANITTVSGR VLKTVFIEAD EEEKDNLKTR IETAIAALND PLSPMSM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 6e-14 | 34 | 94 | 9 | 69 | Transcription factor MYC2 |
5gnj_B | 6e-14 | 34 | 94 | 9 | 69 | Transcription factor MYC2 |
5gnj_E | 6e-14 | 34 | 94 | 9 | 69 | Transcription factor MYC2 |
5gnj_F | 6e-14 | 34 | 94 | 9 | 69 | Transcription factor MYC2 |
5gnj_G | 6e-14 | 34 | 94 | 9 | 69 | Transcription factor MYC2 |
5gnj_I | 6e-14 | 34 | 94 | 9 | 69 | Transcription factor MYC2 |
5gnj_M | 6e-14 | 34 | 94 | 9 | 69 | Transcription factor MYC2 |
5gnj_N | 6e-14 | 34 | 94 | 9 | 69 | Transcription factor MYC2 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.006G074900.4 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024459928.1 | 1e-165 | transcription factor bHLH35 isoform X1 | ||||
Swissprot | Q2HIV9 | 5e-84 | BH035_ARATH; Transcription factor bHLH35 | ||||
TrEMBL | A0A2K1ZYF2 | 1e-164 | A0A2K1ZYF2_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0006s07440.1 | 1e-129 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57150.1 | 1e-65 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.006G074900.4 |