PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.006G074900.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 249aa    MW: 28321.3 Da    PI: 5.0234
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.006G074900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.52.4e-135799754
                        HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                 HLH  7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                          Er+RR+r+N++++ Lr ++P+ +      K++Ka+i + A++YI++L
  Potri.006G074900.1 57 VSERNRRKRLNERLFALRAVVPNiS------KMDKASIIKDAIDYIQEL 99
                        57*********************66......****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.6855099IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-1751114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.54E-1253104No hitNo description
SMARTSM003531.2E-1456105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.7E-1656114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.3E-115799IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048730.00209173236No hitNo description
PROSITE profilePS516718.627174246IPR002912ACT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MESIENIGEE YQNYWETKMF LQNEEFDSWA IDEAFSGYYD SSSPDGAASS AASKNIVSER  60
NRRKRLNERL FALRAVVPNI SKMDKASIIK DAIDYIQELH KQERRIQAEI LELESGKLKK  120
DPGVDVFEQE LPALLRSKKK KIDDRFCDFG GSKNFSRIEL LELRVAYMGE KTLLVSLTCS  180
KRTDTMVKLC EVFESLRVKI ITANITTVSG RVLKTVFIEA DEEEKDNLKT RIETAIAALN  240
DPLSPMSM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A9e-1455115969Transcription factor MYC2
5gnj_B9e-1455115969Transcription factor MYC2
5gnj_E9e-1455115969Transcription factor MYC2
5gnj_F9e-1455115969Transcription factor MYC2
5gnj_G9e-1455115969Transcription factor MYC2
5gnj_I9e-1455115969Transcription factor MYC2
5gnj_M9e-1455115969Transcription factor MYC2
5gnj_N9e-1455115969Transcription factor MYC2
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.006G074900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024459929.10.0transcription factor bHLH35 isoform X2
SwissprotQ2HIV92e-92BH035_ARATH; Transcription factor bHLH35
TrEMBLA0A2K1ZYF30.0A0A2K1ZYF3_POPTR; Uncharacterized protein
STRINGPOPTR_0006s07440.11e-151(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33893369
Representative plantOGRP27531332
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.17e-75bHLH family protein