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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.006G074800.1 | ||||||||
Common Name | POPTR_0006s07430g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | bHLH | ||||||||
Protein Properties | Length: 251aa MW: 28574.5 Da PI: 6.3183 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 32 | 2.1e-10 | 52 | 100 | 2 | 55 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 r+++ + E + R+++N+++ Lre +Pk + Kl+Ka+i + A+ YI++Lq Potri.006G074800.1 52 RTKNIALETNKRKELNDKLLALREAVPKiS------KLDKASIIKDAIGYIQDLQ 100 788899999*******************66......******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 2.22E-14 | 49 | 114 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 13.738 | 50 | 99 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.4E-12 | 52 | 115 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.5E-8 | 52 | 100 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.37E-9 | 52 | 104 | No hit | No description |
SMART | SM00353 | 4.6E-10 | 56 | 105 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
MDIIENIGEY QNYWETSLFW NEELNYSWAT NQQSNLGYHA SSLPEGTASP IRTKNIALET 60 NKRKELNDKL LALREAVPKI SKLDKASIIK DAIGYIQDLQ EQERILQAEI REHESKRLKK 120 HPDSGFEQEL PDLLRSERTR YDQIYHHSLG RSSCPIQVHE VSYSLPLAIT SMGENTLLVS 180 LACNKTTDAM TRICEVFESL KLKIITANAT VLSGMIKKTV VIEVDEEEKE HLKIKIERAV 240 SALRSPHTVQ * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.006G074800.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024458299.1 | 1e-178 | transcription factor bHLH35 isoform X1 | ||||
TrEMBL | A0A2K1ZYE4 | 1e-177 | A0A2K1ZYE4_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0006s07430.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF39354 | 2 | 2 |
Representative plant | OGRP2753 | 13 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57150.1 | 9e-54 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.006G074800.1 |
Entrez Gene | 7474723 |