PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.006G074700.1
Common NamePOPTR_0006s07420g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 249aa    MW: 28771.7 Da    PI: 5.9944
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.006G074700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.63.9e-1259102755
                         HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                           Er RR+++ +++  Lre +Pk +      K++Ka+i + A++YI++Lq
  Potri.006G074700.1  59 VSERSRRKKLSDKLLALREAVPKiS------KMDKASIIKDAIDYIQDLQ 102
                         57*********************66......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.61552101IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.36E-1654116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.56E-1155106No hitNo description
Gene3DG3DSA:4.10.280.104.8E-1658117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-1358107IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-959102IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MEIIEHIGEC ENSWETNWFW NEELNFRHSW ATNQQFNLGS NDSSATDGTT STIFSKNIVS  60
ERSRRKKLSD KLLALREAVP KISKMDKASI IKDAIDYIQD LQEQEKGLQA EIMELESNRL  120
KEDLGYDFDQ ELPVLLRSKR TRYDQIYDHR MARNTCPIQV HEFSVTSMGG KNLFVSLTCN  180
RTTDAMSRIC EVFESLKLKI ITANITTLSE LVKKTVLIEV DEEEKEHVKI KIERAFSVLR  240
STHGTRMM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.006G074700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002308107.20.0transcription factor bHLH35 isoform X1
TrEMBLB9HAY30.0B9HAY3_POPTR; Uncharacterized protein
STRINGPOPTR_0006s07420.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33893369
Representative plantOGRP27531332
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.31e-56bHLH family protein