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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.006G074600.1 | ||||||||
Common Name | POPTR_0006s07410g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | bHLH | ||||||||
Protein Properties | Length: 248aa MW: 28303.7 Da PI: 8.0482 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 44.5 | 2.8e-14 | 57 | 99 | 8 | 55 |
HHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 8 rErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 Er+RR+++N+++ eLr +Pk + Kl+Ka++L+ A+ YI++Lq Potri.006G074600.1 57 SERKRRKKLNDKLLELRGAVPKiS------KLDKASTLKDAIVYIQDLQ 99 6*********************66......******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.231 | 49 | 98 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.97E-17 | 51 | 114 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 9.6E-17 | 55 | 115 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.9E-15 | 55 | 104 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.25E-11 | 56 | 103 | No hit | No description |
Pfam | PF00010 | 1.1E-11 | 57 | 99 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
METIENIAAD QNYCEMTKMF SNDELKSWTM HQAFTQSYEY SSSPEGATST ASKTIVSERK 60 RRKKLNDKLL ELRGAVPKIS KLDKASTLKD AIVYIQDLQE QERRLQAEIM ELESKSLKKD 120 PGFDFEQELP VLLRPKKTRY DQIYDHRAPI SYPIKVHELR VNSMGEKTLL VSLTCSKARD 180 AMIKICEIFE SMKLKIITAN VAIVSGMVKK TVLIEADMEE KDNLKIKIER AFSAESDPDS 240 HLSMQSK* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 57 | 64 | ERKRRKKL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.006G074600.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024460552.1 | 0.0 | transcription factor bHLH35 isoform X1 | ||||
TrEMBL | A0A2K1ZYF1 | 0.0 | A0A2K1ZYF1_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0006s07410.1 | 1e-180 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3389 | 33 | 69 |
Representative plant | OGRP2753 | 13 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57150.1 | 3e-52 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.006G074600.1 |
Entrez Gene | 7485499 |