PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.006G058800.1
Common NamePOPTR_0006s05770g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bZIP
Protein Properties Length: 517aa    MW: 57953.4 Da    PI: 7.7829
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.006G058800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_134.35.3e-11229268544
                         CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNka 44 
                         k  rr+++NReAAr+sR+RKka++++Le    +L++  ++
  Potri.006G058800.1 229 KTLRRLAQNREAARKSRLRKKAYVQQLESSRIKLTQLEQE 268
                         7789************************876666655554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.6E-8222271No hitNo description
SMARTSM003386.6E-8225289IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.289227271IPR004827Basic-leucine zipper domain
CDDcd147081.02E-22229279No hitNo description
SuperFamilySSF579592.88E-7229271No hitNo description
PfamPF001703.2E-8229269IPR004827Basic-leucine zipper domain
PROSITE patternPS000360232247IPR004827Basic-leucine zipper domain
PfamPF141443.2E-32316389IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 517 aa     Download sequence    Send to blast
MPFMGFSRAL GGGIVEEQQQ LESKLFEGSF MATTATNNKV INHSTHLFEQ QQQLQNHHQQ  60
QQNHQQQQQQ HDPRHLQEQH HHQIPYGIMQ SSSSSSIPGN FMSKDAGAYD LGELDQALFL  120
YLDGQDPSTV NQDQRQSGAG MRPPTLNIFP SQPMHVEPSK ANTTSATGLV SSATGGSKKS  180
SEPSMELANT RNVSAPGREP AKAIKREGKR KGPTTSSSEQ EGPKTPDPKT LRRLAQNREA  240
ARKSRLRKKA YVQQLESSRI KLTQLEQELQ RARAQGIFLC GGGEQGLPVG IANINSDAAF  300
FDMEYARWLE EHHRLMCELR AAVQEHIPEN ELRLFVDNCL AHYDEMMNLK IMVAKTDVFH  360
LVSGMWKTPA ERCFMWMGGF RPSELIKIIV GQIEPLTEQQ ILGICGLQQS TQENEDALSQ  420
GLEALNQSLS DTIASESLSY PPNMANYMGQ MAVAMNKLST LEGFVRQADN LRHQTIHRLH  480
QLLTTRQAAR SLLAIAEYFH RLRALSSLWL ARPRRE*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Specifically expressed in roots. {ECO:0000269|PubMed:12777042}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to as1-like elements (5'-TGACGTAAgggaTGACGCA-3') in promoters of target genes. Regulates transcription in response to plant signaling molecules salicylic acid (SA), methyl jasmonate (MJ) and auxin (2,4D) only in leaves. Prevents lateral branching and may repress defense signaling. {ECO:0000269|PubMed:12777042}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00491DAPTransfer from AT5G06839Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.006G058800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002308062.30.0bZIP transcription factor TGA10 isoform X1
SwissprotQ52MZ20.0TGA10_TOBAC; bZIP transcription factor TGA10
TrEMBLA0A3N7GCP70.0A0A3N7GCP7_POPTR; Uncharacterized protein
STRINGPOPTR_0006s05770.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47313455
Representative plantOGRP75161218
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06839.30.0bZIP family protein