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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.006G057600.2 | ||||||||
Common Name | POPTR_0006s05640g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | bHLH | ||||||||
Protein Properties | Length: 323aa MW: 35639.7 Da PI: 8.7024 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 36.5 | 9e-12 | 250 | 295 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L+el+P+ +k + a++L +Av YIk+Lq Potri.006G057600.2 250 SIAERVRRTRISERMRKLQELVPNM----DKQTNTADMLDLAVVYIKDLQ 295 689*********************7....688*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.589 | 244 | 294 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 6.28E-15 | 247 | 307 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.01E-10 | 248 | 297 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 8.2E-14 | 249 | 306 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.5E-12 | 250 | 300 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.1E-8 | 250 | 295 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045944 | Biological Process | positive regulation of transcription from RNA polymerase II promoter | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0001046 | Molecular Function | core promoter sequence-specific DNA binding | ||||
GO:0001228 | Molecular Function | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 323 aa Download sequence Send to blast |
MDSSSSHNSS SGSLRFRSAR SSLLANFTDN GVDNDSVLNF QDFEDKSAAR VREEAVNYSC 60 LPRSYPGLPP HYPRQSSATS SSAMDSSYGL IGSISIGHHE QVEKVDSNPA RQNSSPAGLF 120 GNLTVQNGLL SQISEIGSES MEAGSPDSGK LSSVSVDSRF YSSHGFPYGS WNDSHLSENF 180 SSMKREQENG NLFSNAQNGE LGNRAHVLSH HLSLPKTAME MVAMEKFLHF QDSVPCKIRA 240 KRGCATHPRS IAERVRRTRI SERMRKLQEL VPNMDKQTNT ADMLDLAVVY IKDLQKQYKT 300 LSDNRANCKC LSKQKPVQNR IV* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.006G057600.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024458879.1 | 0.0 | transcription factor bHLH130 isoform X2 | ||||
Swissprot | Q66GR3 | 1e-101 | BH130_ARATH; Transcription factor bHLH130 | ||||
TrEMBL | A0A2K1ZXF9 | 0.0 | A0A2K1ZXF9_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0006s05640.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42280.1 | 2e-93 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.006G057600.2 |
Entrez Gene | 18099859 |
Publications ? help Back to Top | |||
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