PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.006G052200.1
Common NamePOPTR_0006s05070g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 295aa    MW: 32507.9 Da    PI: 8.0552
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.006G052200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.32.8e-05226248223
                         EETTTTEEESSHHHHHHHHHH.T CS
             zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                         +Cp Cg++Fs+  nL  H ++ H
  Potri.006G052200.1 226 ECPQCGTRFSSVTNLIDHVQKvH 248
                         5******************9988 PP
2zf-C2H216.62.2e-05264286223
                         EETTTTEEESSHHHHHHHHHH.T CS
             zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                         +Cp+C+k F+++  L+ H  + H
  Potri.006G052200.1 264 VCPKCSKGFRDPVALVEHVERdH 286
                         6*****************99888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1183107.46E-13549No hitNo description
PROSITE profilePS510397.9011056IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.101.7E-111153IPR000058Zinc finger, AN1-type
SMARTSM001542.2E-51352IPR000058Zinc finger, AN1-type
PfamPF014281.7E-131351IPR000058Zinc finger, AN1-type
SuperFamilySSF1183104.71E-888142No hitNo description
Gene3DG3DSA:4.10.1110.101.5E-1091150IPR000058Zinc finger, AN1-type
PROSITE profilePS510397.91398151IPR000058Zinc finger, AN1-type
SMARTSM001540.032101142IPR000058Zinc finger, AN1-type
PfamPF014284.3E-8101141IPR000058Zinc finger, AN1-type
SuperFamilySSF576671.01E-5225282No hitNo description
PROSITE profilePS501579.723225248IPR007087Zinc finger, C2H2
SMARTSM003550.0086225248IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.605.1E-4226249IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF138941.6E-4226248No hitNo description
PROSITE patternPS000280227248IPR007087Zinc finger, C2H2
SMARTSM003550.11263286IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280265286IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MGTPQFPDLG KHCSVEDCKQ IDFLPFTCDR CRQVFCLEHR SYIKHSCPKA DSNGVIVVIC  60
PLCAKGVRLN PDEDPNISWE VHVNTECDPS NYDKVTKKRK CPVRGCRELL TFSNTIKCRD  120
CTLDHCLKHR FGPDHTCPGP KKPDVSFPFM GLLNRSKKEE SKPNRATAVS SSKWTTNFLS  180
AASTVRASAE AGMSKLSSEI SQAWQTATNS ASPSSSNGSG GMGPEECPQC GTRFSSVTNL  240
IDHVQKVHEK GGNQSRVLQL PMEVCPKCSK GFRDPVALVE HVERDHRDNL VEPT*
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in environmental stress response. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00306DAPTransfer from AT2G41835Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.006G052200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002308952.10.0zinc finger AN1 and C2H2 domain-containing stress-associated protein 11
SwissprotQ8VZ421e-123SAP11_ARATH; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 11
TrEMBLU5G9680.0U5G968_POPTR; Uncharacterized protein
STRINGPOPTR_0006s05070.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58643351
Representative plantOGRP19091520
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41835.11e-123C2H2 family protein