 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Potri.006G051400.1 |
| Common Name | POPTR_0006s04990g |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
| Family |
NAC |
| Protein Properties |
Length: 381aa MW: 42621.4 Da PI: 4.9575 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Potri.006G051400.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 106.5 | 3.4e-33 | 224 | 349 | 1 | 126 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeek.ewyfFskrdkkyatgkrknratksgyWkatgkdk 90
lp G+rF P+d elv+eyL kkv+++ l+ + i+ev+iy+++P L +k+k + +w fF++rdkky++g+r++ra+ g+Wk tg++
Potri.006G051400.1 224 LPIGVRFCPNDRELVMEYLMKKVRNEALPK-NRIHEVNIYEYHPAILAEKYKRYAEiHWSFFTTRDKKYPNGTRPSRAVPGGFWKPTGTSA 313
699************************999.77**************9666664445*******************************976 PP
NAM 91 e.vlskkgelvglkktLvfykgrapkgektdWvmhey 126
+ v++++++ + k+ L fy+ + ++g +t+W m ey
Potri.006G051400.1 314 TcVFDENKNPIASKTPLDFYESKGKDG-RTEWKMLEY 349
6266669999**********8888886.9*******9 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0001172 | Biological Process | transcription, RNA-templated |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0039694 | Biological Process | viral RNA genome replication |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003968 | Molecular Function | RNA-directed RNA polymerase activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 381 aa
Download sequence Send
to blast |
MEENNGLSGT FINNSMMRLV ANSRGSNNND MQFDANILSN GDSNAIQFDE NILSNAMQFD 60
ANILNNGNSN AMQFDANLLN NGNSNAMRFD ENILSNAMQF DENILSNGNS NVMQFDENIL 120
SNAMQFDANI LSNAMQFDAS ILSHNGNSNA VQFDANILNN GNSNAYISPG SLVDDQFCSP 180
NNAMVMACSS SNLINHSGQP QSQGSSRQVN VDDGDYIDPY FFTLPIGVRF CPNDRELVME 240
YLMKKVRNEA LPKNRIHEVN IYEYHPAILA EKYKRYAEIH WSFFTTRDKK YPNGTRPSRA 300
VPGGFWKPTG TSATCVFDEN KNPIASKTPL DFYESKGKDG RTEWKMLEYF PKCMAIHSSS 360
AGGMRLNDCV LCVIYRKGEK K
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 4e-26 | 222 | 377 | 15 | 165 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 4e-26 | 222 | 377 | 15 | 165 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 4e-26 | 222 | 377 | 15 | 165 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 4e-26 | 222 | 377 | 15 | 165 | NO APICAL MERISTEM PROTEIN |
| 4dul_A | 4e-26 | 222 | 377 | 15 | 165 | NAC domain-containing protein 19 |
| 4dul_B | 4e-26 | 222 | 377 | 15 | 165 | NAC domain-containing protein 19 |
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