 |
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Potri.006G049200.1 |
Common Name | POPTR_0006s04770g |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
Family |
HSF |
Protein Properties |
Length: 227aa MW: 26377 Da PI: 9.0585 |
Description |
HSF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Potri.006G049200.1 | genome | JGI | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HSF_DNA-bind | 105.8 | 3.5e-33 | 19 | 110 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92
Fl k+y ++ed +++++isw+ +g+ fvv+++ ef++++Lp+ Fkhsnf+SFvRQLn+YgF+kv +++ weF ++ F+kg++e
Potri.006G049200.1 19 FLLKTYMLVEDLATDDVISWNGEGTGFVVWQPAEFSRDLLPTLFKHSNFSSFVRQLNTYGFRKVATSR---------WEFCNDMFRKGERE 100
9****************************************************************999.........************** PP
XXXXXXXXXX CS
HSF_DNA-bind 93 llekikrkks 102
ll++i+r+k
Potri.006G049200.1 101 LLRQIRRRKA 110
*******985 PP
|
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 227 aa
Download sequence Send
to blast |
MADDKGLLEY VRKSTPPPFL LKTYMLVEDL ATDDVISWNG EGTGFVVWQP AEFSRDLLPT 60 LFKHSNFSSF VRQLNTYGFR KVATSRWEFC NDMFRKGERE LLRQIRRRKA WTNKQQPIAP 120 LIQVAPQEFE EDQRSSSTLS SSEYTSLVDE NKRLKKENGV LSTELTSMKR KCKELLDLVA 180 KNAHLEKEEE DERPKLFGVR LEVEGEREKK RKRAEIRESA TILLSQ*
|
3D Structure ? help Back to Top |
 |
PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
2ldu_A | 3e-19 | 14 | 108 | 15 | 120 | Heat shock factor protein 1 |
5d8k_B | 3e-19 | 17 | 108 | 3 | 105 | Heat shock factor protein 2 |
5d8l_B | 3e-19 | 17 | 108 | 3 | 105 | Heat shock factor protein 2 |
5d8l_D | 3e-19 | 17 | 108 | 3 | 105 | Heat shock factor protein 2 |
5d8l_F | 3e-19 | 17 | 108 | 3 | 105 | Heat shock factor protein 2 |
5d8l_H | 3e-19 | 17 | 108 | 3 | 105 | Heat shock factor protein 2 |
Search in ModeBase |
Functional Description ? help
Back to Top |
Source |
Description |
UniProt | Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | CU233322 | 0.0 | CU233322.1 Populus EST from severe drought-stressed opposite wood. |