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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.006G049200.1 | ||||||||
Common Name | POPTR_0006s04770g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | HSF | ||||||||
Protein Properties | Length: 227aa MW: 26377 Da PI: 9.0585 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 105.8 | 3.5e-33 | 19 | 110 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 Fl k+y ++ed +++++isw+ +g+ fvv+++ ef++++Lp+ Fkhsnf+SFvRQLn+YgF+kv +++ weF ++ F+kg++e Potri.006G049200.1 19 FLLKTYMLVEDLATDDVISWNGEGTGFVVWQPAEFSRDLLPTLFKHSNFSSFVRQLNTYGFRKVATSR---------WEFCNDMFRKGERE 100 9****************************************************************999.........************** PP XXXXXXXXXX CS HSF_DNA-bind 93 llekikrkks 102 ll++i+r+k Potri.006G049200.1 101 LLRQIRRRKA 110 *******985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00415 | 6.4E-51 | 15 | 108 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.10.10 | 1.7E-35 | 15 | 108 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 7.62E-32 | 15 | 108 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 1.6E-29 | 19 | 108 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.0E-17 | 19 | 42 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.0E-17 | 57 | 69 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 58 | 82 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.0E-17 | 70 | 82 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence Send to blast |
MADDKGLLEY VRKSTPPPFL LKTYMLVEDL ATDDVISWNG EGTGFVVWQP AEFSRDLLPT 60 LFKHSNFSSF VRQLNTYGFR KVATSRWEFC NDMFRKGERE LLRQIRRRKA WTNKQQPIAP 120 LIQVAPQEFE EDQRSSSTLS SSEYTSLVDE NKRLKKENGV LSTELTSMKR KCKELLDLVA 180 KNAHLEKEEE DERPKLFGVR LEVEGEREKK RKRAEIRESA TILLSQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 3e-19 | 14 | 108 | 15 | 120 | Heat shock factor protein 1 |
5d8k_B | 3e-19 | 17 | 108 | 3 | 105 | Heat shock factor protein 2 |
5d8l_B | 3e-19 | 17 | 108 | 3 | 105 | Heat shock factor protein 2 |
5d8l_D | 3e-19 | 17 | 108 | 3 | 105 | Heat shock factor protein 2 |
5d8l_F | 3e-19 | 17 | 108 | 3 | 105 | Heat shock factor protein 2 |
5d8l_H | 3e-19 | 17 | 108 | 3 | 105 | Heat shock factor protein 2 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.006G049200.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CU233322 | 0.0 | CU233322.1 Populus EST from severe drought-stressed opposite wood. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002308023.1 | 1e-166 | heat stress transcription factor B-3 | ||||
Swissprot | O22230 | 3e-71 | HSFB3_ARATH; Heat stress transcription factor B-3 | ||||
TrEMBL | B9H9T1 | 1e-164 | B9H9T1_POPTR; HSF family protein | ||||
STRING | POPTR_0006s04770.1 | 1e-165 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1592 | 33 | 95 | Representative plant | OGRP96 | 17 | 233 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41690.1 | 3e-66 | heat shock transcription factor B3 |
Link Out ? help Back to Top | |
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Phytozome | Potri.006G049200.1 |
Entrez Gene | 7473610 |