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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Potri.006G048700.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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| Family |
MIKC_MADS |
| Protein Properties |
Length: 251aa MW: 27990.6 Da PI: 7.6675 |
| Description |
MIKC_MADS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Potri.006G048700.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SRF-TF | 93.9 | 7.3e-30 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
krien rqvtfskRrng+lKKA ELSvLCdaevavi+fsstgklye+ss
Potri.006G048700.1 9 KRIENLNSRQVTFSKRRNGLLKKARELSVLCDAEVAVIVFSSTGKLYEFSS 59
79***********************************************96 PP
|
| 2 | K-box | 70.5 | 5.2e-24 | 88 | 174 | 14 | 100 |
K-box 14 aeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
+ s + e++ +k+e+++L+ + +++G++L+ Ls+keLq+Le+qL ++ ++++kK+++l++q+++++++e+++ en++Lrk++ee
Potri.006G048700.1 88 EHSNSAEVNAVKDELSKLRLTCLQMMGQQLDGLSFKELQHLEHQLSAGILSVKDKKEQMLMDQLKKSKMQEQKATLENESLRKQIEE 174
446789******************************************************************************997 PP
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| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| PROSITE profile | PS50066 | 33.473 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
| SMART | SM00432 | 1.6E-43 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
| SuperFamily | SSF55455 | 2.62E-33 | 2 | 84 | IPR002100 | Transcription factor, MADS-box |
| CDD | cd00265 | 7.13E-43 | 2 | 69 | No hit | No description |
| PRINTS | PR00404 | 1.5E-30 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
| PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF00319 | 7.5E-27 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 1.5E-30 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 1.5E-30 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF01486 | 3.1E-17 | 87 | 172 | IPR002487 | Transcription factor, K-box |
| PROSITE profile | PS51297 | 12.366 | 88 | 178 | IPR002487 | Transcription factor, K-box |
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009555 | Biological Process | pollen development |
| GO:0009910 | Biological Process | negative regulation of flower development |
| GO:0048577 | Biological Process | negative regulation of short-day photoperiodism, flowering |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 251 aa
Download sequence Send
to blast |
MGRGKIEIKR IENLNSRQVT FSKRRNGLLK KARELSVLCD AEVAVIVFSS TGKLYEFSST 60
SMEHTLSRYG SGLDLDYNDH PSDDHGAEHS NSAEVNAVKD ELSKLRLTCL QMMGQQLDGL 120
SFKELQHLEH QLSAGILSVK DKKEQMLMDQ LKKSKMQEQK ATLENESLRK QIEELKRGSR 180
PKSAFLELSP LDRRFAVASS KPDSNRKPQE EEDLSDTSLH LGLSSDVCHK RKADKIESVS 240
NDSGSQVASG *
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: During the reproductive phase, accumulates in immature buds and at the base of the floral organs, and in the receptacle, ovules, anther filaments, and stigma and style of open flowers. Later observed in sporogenous tissue of anthers. During male gametogenesis, expressed in the microspores before they separate from each other. Later present at high levels within pollen grains up to stage 13 of flower development, when anthers dehisce. During carpel development, first detected in developing ovules. After fertilization, confined to globular structures or nodules of proliferating free nuclear endosperm required for embryo development. Disappears from the endosperm at to the heart stage of embryo development, when very little nuclear endosperm remains. Never detected in developing embryos at any stage. In young seedlings, present everywhere except in a portion of the hypocotyl and in newly emerging leaves. {ECO:0000269|PubMed:11115127, ECO:0000269|PubMed:17521410}. |
| Uniprot | TISSUE SPECIFICITY: Mostly expressed in pollen, roots, flowers and siliques, and to a lower extent, in stems and leaves. Expressed in the endosperm and in developing male and female gametophytes. Also present in seedlings. {ECO:0000269|PubMed:11115127, ECO:0000269|PubMed:12837945, ECO:0000269|PubMed:12949148, ECO:0000269|PubMed:16028119, ECO:0000269|PubMed:17521410}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor involved in the negative regulation of flowering, probably through the photoperiodic pathway. Prevents premature flowering. Downstream regulator of a subset of the MIKC* MADS-controlled genes required during pollen maturation. {ECO:0000269|PubMed:17521410, ECO:0000269|PubMed:18034896, ECO:0000269|PubMed:18799658}. |
