PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.006G039800.3
Common NamePOPTR_0006s03820g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family FAR1
Protein Properties Length: 390aa    MW: 42407.5 Da    PI: 9.0085
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.006G039800.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR161.91.9e-1974163291
                FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktek.errtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                         +Y+eYA +vGF++ k++ +ks ++g+++  t+ Cs++gk+ ++ ++t++ + r+r   rt+Ckakl+v+   dg+ +v ++ leHnHel+p
  Potri.006G039800.3  74 YYDEYACHVGFNTIKKS-TKSGDDGNVKYFTLACSRSGKELPSASQTNRfNFRKRLPPRTNCKAKLNVTIGPDGRVYVCRVILEHNHELVP 163
                         9***********99886.66679999**************99998844415679999********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.3E-1774163IPR004330FAR1 DNA binding domain
Gene3DG3DSA:3.40.50.13601.4E-38252388No hitNo description
SuperFamilySSF1009501.63E-32254388No hitNo description
CDDcd013981.82E-44258388IPR004788Ribose 5-phosphate isomerase, type A
PfamPF060263.0E-21307388IPR004788Ribose 5-phosphate isomerase, type A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009052Biological Processpentose-phosphate shunt, non-oxidative branch
GO:0004751Molecular Functionribose-5-phosphate isomerase activity
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MEDDSKMNVI VDTKVNVTVE KDIEGRNDKM VVDSDEVIVI NIDEKESEGV GNDDEMKPPS  60
IGMVFNTPDE VRSYYDEYAC HVGFNTIKKS TKSGDDGNVK YFTLACSRSG KELPSASQTN  120
RFNFRKRLPP RTNCKAKLNV TIGPDGRVYV CRVILEHNHE LVPGLHGMKK KKSRAPRAKK  180
VGTGQSQVPH SVVHEAGSSA NLKSDCAIPR IVTDPSQIIF GSSHLLTKRS VNRNVSSGSK  240
RRNSVFASPV LNQESTERIL ARKAVELVKS GMVIGLGSGT TISMVMEELG RLIREGKLKD  300
IIAVGGNYQS RVLATQFGVT VVDLSGVSKI DIAFDGVDEV DFNKNLLKCG GPAHTMQKVI  360
DSVASECIIL VDQPKVVHRL GSAFPVPVS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1lk5_A3e-272513891139D-Ribose-5-Phosphate Isomerase
1lk5_B3e-272513891139D-Ribose-5-Phosphate Isomerase
1lk5_C3e-272513891139D-Ribose-5-Phosphate Isomerase
1lk5_D3e-272513891139D-Ribose-5-Phosphate Isomerase
1lk7_A3e-272513891139D-Ribose-5-Phosphate Isomerase
1lk7_B3e-272513891139D-Ribose-5-Phosphate Isomerase
1lk7_C3e-272513891139D-Ribose-5-Phosphate Isomerase
1lk7_D3e-272513891139D-Ribose-5-Phosphate Isomerase
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.006G039800.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU2779585e-70GU277958.1 Populus balsamifera isolate FRE01 haplotype A putative pyruvate decarboxylase gene, partial sequence.
GenBankGU2779595e-70GU277959.1 Populus balsamifera isolate FRE01 haplotype B putative pyruvate decarboxylase gene, partial sequence.
GenBankGU2779605e-70GU277960.1 Populus balsamifera isolate GAL12 haplotype A putative pyruvate decarboxylase gene, partial sequence.
GenBankGU2779615e-70GU277961.1 Populus balsamifera isolate GAL12 haplotype B putative pyruvate decarboxylase gene, partial sequence.
GenBankGU2779625e-70GU277962.1 Populus balsamifera isolate GIL14 haplotype A putative pyruvate decarboxylase gene, partial sequence.
GenBankGU2779635e-70GU277963.1 Populus balsamifera isolate GIL14 haplotype B putative pyruvate decarboxylase gene, partial sequence.
GenBankGU2779645e-70GU277964.1 Populus balsamifera isolate HAY07 haplotype A putative pyruvate decarboxylase gene, partial sequence.
GenBankGU2779655e-70GU277965.1 Populus balsamifera isolate HAY07 haplotype B putative pyruvate decarboxylase gene, partial sequence.
GenBankGU2779665e-70GU277966.1 Populus balsamifera isolate INU03 haplotype A putative pyruvate decarboxylase gene, partial sequence.
GenBankGU2779675e-70GU277967.1 Populus balsamifera isolate INU03 haplotype B putative pyruvate decarboxylase gene, partial sequence.
GenBankGU2779685e-70GU277968.1 Populus balsamifera isolate MGR10 haplotype A putative pyruvate decarboxylase gene, partial sequence.
GenBankGU2779695e-70GU277969.1 Populus balsamifera isolate MGR10 haplotype B putative pyruvate decarboxylase gene, partial sequence.
GenBankGU2779705e-70GU277970.1 Populus balsamifera isolate NWL07 haplotype A putative pyruvate decarboxylase gene, partial sequence.
GenBankGU2779715e-70GU277971.1 Populus balsamifera isolate NWL07 haplotype B putative pyruvate decarboxylase gene, partial sequence.
GenBankGU2779725e-70GU277972.1 Populus balsamifera isolate RNA13 haplotype A putative pyruvate decarboxylase gene, partial sequence.
GenBankGU2779735e-70GU277973.1 Populus balsamifera isolate RNA13 haplotype B putative pyruvate decarboxylase gene, partial sequence.
GenBankGU2779745e-70GU277974.1 Populus balsamifera isolate STO11 haplotype A putative pyruvate decarboxylase gene, partial sequence.
GenBankGU2779755e-70GU277975.1 Populus balsamifera isolate STO11 haplotype B putative pyruvate decarboxylase gene, partial sequence.
GenBankGU2779765e-70GU277976.1 Populus balsamifera isolate WHR03 haplotype A putative pyruvate decarboxylase gene, partial sequence.
GenBankGU2779775e-70GU277977.1 Populus balsamifera isolate WHR03 haplotype B putative pyruvate decarboxylase gene, partial sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002307978.20.0probable ribose-5-phosphate isomerase 3, chloroplastic isoform X1
TrEMBLB9H9330.0B9H933_POPTR; Uncharacterized protein
STRINGPOPTR_0006s03820.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22170.23e-12far-red elongated hypocotyls 3