PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.006G029300.1
Common NamePOPTR_0097s00210g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 426aa    MW: 47565.3 Da    PI: 4.6122
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.006G029300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM652.2e-2081431127
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkklel.eevikevdiykv...ePwdLpk..kvkaeekewyfFskrdkkyatgkrknr.a..tksgy 82 
                         lp GfrF Ptdeel+++yL +kv+g+ +++ +++ik +++y      P ++ k   +k++++ ++fF++ +kk+++++++ r +  t+ g+
  Potri.006G029300.1   8 LPTGFRFLPTDEELISYYLLRKVHGRLTPEeADMIKVCNVYGEgarPPCEIFKftGHKGGDDTLFFFTTLSKKTPNSTQRMRrTvgTNGGT 98 
                         699**********************985551566999999965344899996333556677799***********96655552445779** PP

                 NAM  83 Wkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyr 127
                         W+    ++  ++  k+e +g+k+ + + ++++p+ ++  W++ ey 
  Potri.006G029300.1  99 WHGDSVEEVTYRLdKTEFKGTKRRFRYQNKQRPD-QNGCWTLLEYG 143
                         **7766544444347778*********9777776.8999*****95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-225158IPR003441NAC domain
PROSITE profilePS5100525.2868159IPR003441NAC domain
PfamPF023654.0E-159142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    Send to blast
MQGILSHLPT GFRFLPTDEE LISYYLLRKV HGRLTPEEAD MIKVCNVYGE GARPPCEIFK  60
FTGHKGGDDT LFFFTTLSKK TPNSTQRMRR TVGTNGGTWH GDSVEEVTYR LDKTEFKGTK  120
RRFRYQNKQR PDQNGCWTLL EYGSESISEN VVICKLKISD HGLKESRKRK SMGYSSEVIQ  180
RNINIDAVIN SGPTMAQSAH DQEPRLLIQS QEMLPLVGTV SNEDNGGFSA TGDTFYSIQN  240
MGLEAPAIGN IEPVLPLIQP QRANFIHEPM ISEHQQMAFA SFSDNQKVVL QSEAVFDGYH  300
ESFNEHPIIS FEPIMLRAEE SNVIDNQGIM GLADISTEDY FENAAANVNF ETMTSANENQ  360
QMEPASYNGD EAVSPAGDNA VTPLDAAPAV SAIPVMEAGL IEYWKNETNW FDNFQASILF  420
MIIDK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1165170SRKRKS
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.006G029300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2167630.0AC216763.1 Populus trichocarpa clone POP006-F11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006388809.10.0NAC domain-containing protein 96
TrEMBLU7E1F00.0U7E1F0_POPTR; Uncharacterized protein
STRINGPOPTR_0097s00210.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14731213
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24590.21e-09TCV-interacting protein