PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.006G028900.1
Common NamePOPTR_0097s00260g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 286aa    MW: 31881.7 Da    PI: 6.3623
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.006G028900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM60.74.8e-1991452127
                 NAM   2 ppGfrFhPtdeelvveyLkkkvegkklel.eevikevdiykve....PwdLpk..kvkaeekewyfFskrdkkyatgk..rknra..tksg 81 
                          pGfrF+Pt e+l+++yL++kv+g+ +++ +++ik ++i++ e    Pw++ k   +k +++ +yfF++  kk++++   r +r+  t+ g
  Potri.006G028900.1   9 SPGFRFDPTGEQLISYYLARKVHGRLTPEeTDMIKVCNILYGEgarpPWEIFKlaGHKVGDDALYFFTTLIKKTRKSGawRMSRTvgTDGG 99 
                         69**********************9955515669999*9986444449*996333555688899****9999887643348888545789* PP

                 NAM  82 yWkatgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyr 127
                         +W+  g ++ v+++  ++e +g+k+ + + ++++p+ ++  W + ey 
  Potri.006G028900.1 100 TWHGDGVEE-VTCRldNREFKGTKRRFRYQNNQRPD-QNGCWNLLEYG 145
                         *****9955.4444458888*********9887777.8999***9995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.24E-207160IPR003441NAC domain
PROSITE profilePS5100524.3868161IPR003441NAC domain
PfamPF023653.9E-1410144IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MQDILSRFSP GFRFDPTGEQ LISYYLARKV HGRLTPEETD MIKVCNILYG EGARPPWEIF  60
KLAGHKVGDD ALYFFTTLIK KTRKSGAWRM SRTVGTDGGT WHGDGVEEVT CRLDNREFKG  120
TKRRFRYQNN QRPDQNGCWN LLEYGSESIS DNIVICKLKI SEHGLKESRK RKSMRPLAGT  180
VSNEDNGGCS ATGDTFYSIQ NIGPMTAAYE NQQMEPASYN GGVGVCPAGD NAVTPENAAP  240
AVSAIPVMDA CLTESLNNET SWSANFEALP DFRSLWSPRW IEDHF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1167172SRKRKS
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.006G028900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1494840.0AC149484.1 Populus trichocarpa clone Pop1-69M19, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006380956.11e-114NAC domain-containing protein 78
TrEMBLU7DZR80.0U7DZR8_POPTR; Uncharacterized protein
STRINGPOPTR_0097s00260.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14731213
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10480.28e-15NAC domain containing protein 50