PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.006G028700.1
Common NamePOPTR_0097s00280g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 344aa    MW: 38678.6 Da    PI: 6.5761
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.006G028700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM69.21.2e-2181421127
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykv.ePwdLpkkvka...eekewyfFskrdkkyatgk.rknra..tksgyW 83 
                         lppGf F+Pt e+l+ +yL++kv+g+  +e++++ik+ ++y + ePw+L +kv++   +++ +y F++ dkk+a+++ r +r+  t+ g W
  Potri.006G028700.1   8 LPPGFIFRPTGEQLIGHYLHHKVHGRLtVEADDMIKDYNLYGAeEPWELFNKVTGhkeGDDVLYCFTTLDKKTAKSTkRMRRTvgTNGGKW 98 
                         79**********************9985777888*******9868****75444411144577*********9986615555445779*** PP

                 NAM  84 katgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyr 127
                         +    ++ +++  ++e +g+k+ + +  +++++ ++  W++ ey 
  Potri.006G028700.1  99 HGDSLEEVIYRLdNREFKGTKRRFRYQ-NKQRRDKHGCWTLLEYG 142
                         ***999999987567779*******97.677777999******95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.58E-225157IPR003441NAC domain
PROSITE profilePS5100526.4568158IPR003441NAC domain
PfamPF023651.4E-129141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MQKIHTLLPP GFIFRPTGEQ LIGHYLHHKV HGRLTVEADD MIKDYNLYGA EEPWELFNKV  60
TGHKEGDDVL YCFTTLDKKT AKSTKRMRRT VGTNGGKWHG DSLEEVIYRL DNREFKGTKR  120
RFRYQNKQRR DKHGCWTLLE YGSQSISDNI VICELKMSDH GLKESRKRKS MWPLPSGDMG  180
LEAPAIVNIE PALRLQPQQA NFIQEPMISE HQQVAFASFS DNHQKVVLQS EAVFDGYGRS  240
QNIVESFYEH PKISFEPMKA EESKIIKNQE ITGLADFPTQ DSFENAAAII NSEPMTSAYE  300
NQQMEPASYN GGGGVCPAGD NAVTPENAAP AVSAIPAMGH SIY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1164169SRKRKS
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.006G028700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2167631e-162AC216763.1 Populus trichocarpa clone POP006-F11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006380956.11e-129NAC domain-containing protein 78
TrEMBLU7E2G70.0U7E2G7_POPTR; Uncharacterized protein
STRINGPOPTR_0097s00280.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14731213
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24430.26e-13NAC domain containing protein 38