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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.006G005500.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | NF-YB | ||||||||
Protein Properties | Length: 215aa MW: 23236.9 Da PI: 5.7651 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 177.7 | 1.1e-55 | 55 | 150 | 2 | 97 |
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyre 92 reqd++lPianvsrimkk+lPanakiskd ketvqecvsefisf+t+easdkcqrekrkt+ngddllwa++tlGfedy+eplk+yl+k+re Potri.006G005500.1 55 REQDKLLPIANVSRIMKKALPANAKISKDGKETVQECVSEFISFITGEASDKCQREKRKTVNGDDLLWAMTTLGFEDYAEPLKIYLQKFRE 145 89***************************************************************************************** PP NF-YB 93 legek 97 +ege+ Potri.006G005500.1 146 TEGER 150 ***97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 1.7E-52 | 50 | 161 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 2.79E-38 | 57 | 159 | IPR009072 | Histone-fold |
Pfam | PF00808 | 6.3E-26 | 61 | 124 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 4.3E-21 | 88 | 106 | No hit | No description |
PROSITE pattern | PS00685 | 0 | 91 | 107 | IPR003956 | Transcription factor, NFYB/HAP3, conserved site |
PRINTS | PR00615 | 4.3E-21 | 107 | 125 | No hit | No description |
PRINTS | PR00615 | 4.3E-21 | 126 | 144 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence Send to blast |
MYGPKQTISI SISISIYIYI KESQAQESLG FMADSDNESG GQNNSNTNYS ETSSREQDKL 60 LPIANVSRIM KKALPANAKI SKDGKETVQE CVSEFISFIT GEASDKCQRE KRKTVNGDDL 120 LWAMTTLGFE DYAEPLKIYL QKFRETEGER TAAMGTVRQG DQRDGAVVNS GDSGGGFGGS 180 GGNVYGGMQS SMMMMGHHPL HQGNMYGSAS GRPK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4g91_B | 2e-47 | 55 | 145 | 2 | 92 | Transcription factor HapC (Eurofung) |
4g92_B | 2e-47 | 55 | 145 | 2 | 92 | Transcription factor HapC (Eurofung) |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pth.12515 | 0.0 | bud| catkin |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:11250072}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.006G005500.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC210129 | 1e-146 | AC210129.1 Populus trichocarpa clone POP009-F11, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002308762.2 | 1e-135 | nuclear transcription factor Y subunit B-3 | ||||
Swissprot | O23310 | 4e-70 | NFYB3_ARATH; Nuclear transcription factor Y subunit B-3 | ||||
TrEMBL | A0A2K1ZUS6 | 1e-158 | A0A2K1ZUS6_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0006s00730.1 | 1e-134 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF591 | 34 | 150 | Representative plant | OGRP168 | 17 | 170 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G14540.1 | 4e-70 | nuclear factor Y, subunit B3 |
Link Out ? help Back to Top | |
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Phytozome | Potri.006G005500.1 |
Publications ? help Back to Top | |||
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