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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.005G258700.3 | ||||||||
Common Name | POPTR_0005s28010g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | SBP | ||||||||
Protein Properties | Length: 1073aa MW: 118588 Da PI: 7.9375 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 128.2 | 3.2e-40 | 144 | 221 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv++C+++l++ak+yhrrhkvCevhska+++lv +++qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+q+ Potri.005G258700.3 144 MCQVDNCKENLTTAKDYHRRHKVCEVHSKATKALVGKQMQRFCQQCSRFHPLTEFDEGKRSCRRRLAGHNRRRRKTQP 221 6**************************************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 2.2E-33 | 139 | 206 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 31.556 | 142 | 219 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 9.03E-37 | 143 | 223 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 2.6E-29 | 145 | 218 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1073 aa Download sequence Send to blast |
MEKVGAQVAA PMFIHQALSS RYCDLASMAK KRDLSYQMPN FQLQQHHFLE TSLEKNWNSK 60 AWDWDSVGFV ARPSDAAETS RLGTASRETK KKDESDYKTK SNSANEDDGL GLNLGGSLTS 120 VEEPVSRPNK RVRSGSPANG SYPMCQVDNC KENLTTAKDY HRRHKVCEVH SKATKALVGK 180 QMQRFCQQCS RFHPLTEFDE GKRSCRRRLA GHNRRRRKTQ PEDVTSRLLV PGNQDINSNG 240 NLDIVNLLTA LARSQGRADD KSTTCTTVPD KDQLIQILSK INSLPLPMDL AAKLSNIASL 300 NGKNPDQPSS AHQNRLHGTA SSSSTVDLLA VLSATLAASA PDALAILSQR SSQSSDSDKS 360 KLTGPNQVTG SDLQKRSNIE FPSVGGERVS YCYESPVEDS DCQIQESRPN FPLQLFSSSP 420 ENDSPPKLAS SRKYFSSDSS NPIEDRSPSS SPPVAQKLFP LQSTAETMKS EKMSISREVN 480 ANVEGSRSHA CVLPLELFRG SNREPDHGSF QNFPYQGGYT SSSGSDHSPS SQNSDSQDRT 540 GRLIFKLFDK DPSHFPGTLR TQIYNWLSNS PSEMESYIRP GCVVLSVYLS MSSAAWEQLE 600 RNLLQQVNSL VQDSDSDLWR SGRFLLNTGG QLASHKDGKI RLCKSWRTWS SPELISVSPV 660 AVVGGQETSL QLKGRNLTSP GTKIHCMHMG GYTLKEITDS TSPGSIYDEI NMGGFKIHGP 720 SPSILGRCFI EVENGFKVNS FPVIIADASI CKELRLLESE FDEKAKVGDI VSEEQAHDLG 780 RPRSREEVLH FLNELGWLFQ RKRESSILEV PDFSLSRFRF LLIFSVERDY CVLVKTILDM 840 LVERNMCRDE LSKESLEMLS EVQLLNRSVK RSCRKMVDLL IHYSIVSHDN SSRTYIFPPN 900 VRGPGGITPL HLVACASGSD GLVDALTNDP HEIGLSCWNS LLDANGQSPY AYALMTKNHS 960 YNLLVARKLA DKINAQVSVT IGNEIEQPAL EQEHGAVSQF QQGRKSCAKC AIVAAKFHKR 1020 VPGSQGLLQR PYVHSMLAIA AVCVCVCLFF RGAPNIGLVA PFKWENLDFG TI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 3e-30 | 135 | 218 | 1 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in vasculature of aerial parts. Expressed in cotyledons and leaf petioles. {ECO:0000269|PubMed:15703061}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May play a role in plant development. {ECO:0000250, ECO:0000269|PubMed:15703061}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00155 | DAP | Transfer from AT1G20980 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.005G258700.3 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024456224.1 | 0.0 | squamosa promoter-binding-like protein 14 | ||||
Refseq | XP_024456225.1 | 0.0 | squamosa promoter-binding-like protein 14 | ||||
Refseq | XP_024456226.1 | 0.0 | squamosa promoter-binding-like protein 14 | ||||
Swissprot | Q8RY95 | 0.0 | SPL14_ARATH; Squamosa promoter-binding-like protein 14 | ||||
TrEMBL | A0A2K2AMS4 | 0.0 | A0A2K2AMS4_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0005s28010.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G20980.1 | 0.0 | squamosa promoter binding protein-like 14 |
Link Out ? help Back to Top | |
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Phytozome | Potri.005G258700.3 |
Entrez Gene | 7485670 |
Publications ? help Back to Top | |||
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